RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CLUP10909 449 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 CTLA4P16410 223 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 CDKN2AP42771 156 aaKnown RBP4.94□□□□□ -1.62
CPNE3-208ENST00000614678 RPS4XP62701 263 aaKnown RBP4.94□□□□□ -1.62
CPNE3-208ENST00000614678 ST3GAL3Q11203 375 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 KRT72Q14CN4 511 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 MAD2L1BPQ15013 274 aaPredicted RBP4.94□□□□□ -1.62
CPNE3-208ENST00000614678 ALG10Q5BKT4 473 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 SPATA46Q5T0L3 261 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 SWT1Q5T5J6 900 aaKnown RBP4.94□□□□□ -1.62
CPNE3-208ENST00000614678 SMARCD3Q6STE5 483 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF101Q8IZC7 436 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 GPR137CQ8N3F9 429 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 OR8D4Q8NGM9 314 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 NABP1Q96AH0 204 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 SLCO4A1Q96BD0 722 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 NMD3Q96D46 503 aaKnown RBP4.94□□□□□ -1.62
CPNE3-208ENST00000614678 FOXB1Q99853 325 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 GORASP2Q9H8Y8 452 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 B3GNT2Q9NY97 397 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF229Q9UJW7 825 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 WNK2Q9Y3S1 2297 aa4.94□□□□□ -1.62
CPNE3-208ENST00000614678 TEX13CA0A0J9YWL9 993 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 C5orf63A6NC05 138 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ARHGEF9O43307 516 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC43A1O75387 559 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 OR6A2O95222 327 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 BCL10O95999 233 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 GASTP01350 101 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 DNASE1P24855 282 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CSNK1A1P48729 337 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 MAP2K6P52564 334 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CD47Q08722 323 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CORO6Q6QEF8 472 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 FAM122BQ7Z309 247 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZDHHC21Q8IVQ6 265 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF525Q8N782 197 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CYB561A3Q8NBI2 242 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PIK3C3Q8NEB9 887 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM54Q969K7 222 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF566Q969W8 418 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 NSMCE2Q96MF7 247 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 EPYCQ99645 322 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 NIPSNAP1Q9BPW8 284 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CACNG6Q9BXT2 260 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PARPBPQ9NWS1 579 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SIGLEC7Q9Y286 467 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ATP23Q9Y6H3 246 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 IGHV3-64DA0A0J9YX35 117 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 EFCAB9A8MZ26 197 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 C3orf80F5H4A9 247 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 H7C1Q1 480 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 M0R129 80 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 MGRN1O60291 552 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PTP4A3O75365 173 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 VAMP5O95183 116 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PPP1R3DO95685 299 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CLPTM1O96005 669 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 GYPBP06028 91 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 H1F0P07305 194 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CCNOP22674 350 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 APEX1P27695 318 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PTH2RP49190 550 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 NAAAQ02083 359 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 PRKCDQ05655 676 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TNK1Q13470 666 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TRAM2Q15035 370 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 HIST3H3Q16695 136 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 MBOAT2Q6ZWT7 520 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF771Q7L3S4 317 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 IQCF1Q8N6M8 205 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SCAIQ8N9R8 606 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 POMGNT2Q8NAT1 580 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ACOT11Q8WXI4 607 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 FBXW5Q969U6 566 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 UTP4Q969X6 686 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC25A44Q96H78 314 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 MPP4Q96JB8 637 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 KCNK17Q96T54 332 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 HDHD5Q9BXW7 423 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SYT4Q9H2B2 425 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CXXC4Q9H2H0 198 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TPK1Q9H3S4 243 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 INIPQ9NRY2 104 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TREM2Q9NZC2 230 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 AURKCQ9UQB9 309 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 HIF3AQ9Y2N7 669 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CORINQ9Y5Q5 1042 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 IER3IP1Q9Y5U9 82 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 IGHV2OR16-5A0A0B4J2B6 119 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM129A0AVI4 362 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF726A6NNF4 738 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ANKRD65E5RJM6 399 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SSX4O60224 188 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 NGFP01138 241 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 IGKV3-15P01624 115 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF14P17017 642 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 FKBP2P26885 142 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 LAP3P28838 519 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 TTKP33981 857 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms