RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CELSR3Q9NYQ7 3312 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 IGKV1D-42A0A075B6H8 117 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 A0A087WZY1 265 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 TMED7-TICAM2A0A0A6YYA0 188 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 FAM240BA0A1B0GVZ2 78 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 G3V3Y1 287 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 ORC5O43913 435 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 GPRIN2O60269 458 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 SLC25A12O75746 678 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 CBR3O75828 277 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 F10P00742 488 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 THBS2P35442 1172 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 PLA2G5P39877 138 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 EIF1P41567 113 aaKnown RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 ID4P47928 161 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 PITPNBP48739 271 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 INPP1P49441 399 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 MAP2K6P52564 334 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 CAV3P56539 151 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 RPS7P62081 194 aaKnown RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 ZNF85Q03923 595 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 MFAP5Q13361 173 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 CDONQ4KMG0 1287 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 HSD17B12Q53GQ0 312 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 PYHIN1Q6K0P9 492 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 SFXN4Q6P4A7 337 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 POMZP3Q6PJE2 187 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 ADGRG3Q86Y34 549 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 FAM122AQ96E09 287 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 SMIM19Q96E16 107 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 SGTBQ96EQ0 304 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 C4orf36Q96KX1 117 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 JSRP1Q96MG2 331 aaPredicted RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 TNFRSF13CQ96RJ3 184 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 CNN2Q99439 309 aaKnown RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 ZNF552Q9H707 407 aaPredicted RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 MED20Q9H944 212 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 RPRD1BQ9NQG5 326 aaKnown RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 ZNF275Q9NSD4 429 aaPredicted RBP10.52□□□□□ -0.72
VRK3-223ENST00000601341 PLA2G3Q9NZ20 509 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 TMED7Q9Y3B3 224 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 HRH3Q9Y5N1 445 aa10.52□□□□□ -0.72
VRK3-223ENST00000601341 AKAP13Q12802 2813 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 TRAV27A0A087WT01 109 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 OR5H15A6NDH6 313 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 A8MVM7 634 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 CENPBD1B2RD01 187 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 FAM25AB3EWG3 89 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 FAM25CB3EWG5 89 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 FAM25GB3EWG6 89 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 TFECO14948 347 aaPredicted RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 LRRTM2O43300 516 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 SUSD5O60279 629 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 PPP1R3DO95685 299 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 ELK1P19419 428 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 ERP29P30040 261 aaKnown RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 DNASE1L1P49184 302 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 GBX2P52951 348 aaPredicted RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 DSCR4P56555 118 aaPredicted RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 RPS4XP62701 263 aaKnown RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 EGR4Q05215 589 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 MRPL28Q13084 256 aaKnown RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 CDK10Q15131 360 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 P2RY14Q15391 338 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 PLPPR5Q32ZL2 321 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 RPL22L1Q6P5R6 122 aaKnown RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 C5orf46Q6UWT4 87 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 OR51A7Q8NH64 312 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 RPS4Y2Q8TD47 263 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 HAS2Q92819 552 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 ZBTB8AQ96BR9 441 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 GNRHR2Q96P88 292 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 SIGLEC12Q96PQ1 595 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 MRI1Q9BV20 369 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 MMP28Q9H239 520 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 OR51V1Q9H2C8 321 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 TP63Q9H3D4 680 aaPredicted RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 CCDC86Q9H6F5 360 aaKnown RBP10.52□□□□□ -0.73
VRK3-223ENST00000601341 NIPAL2Q9H841 368 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 B3GAT2Q9NPZ5 323 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 ST6GALNAC2Q9UJ37 374 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 SSUH2Q9Y2M2 353 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 SLC6A5Q9Y345 797 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 ZNF337Q9Y3M9 751 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 KCNMB2Q9Y691 235 aa10.52□□□□□ -0.73
VRK3-223ENST00000601341 SPTBN4Q9H254 2564 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 DOCK10Q96BY6 2186 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 A0A0G2JK05 382 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 NOTOA8MTQ0 251 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 IMPA2O14732 288 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 FUT1P19526 365 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 DPP4P27487 766 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 ADH6P28332 368 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 SLC6A1P30531 599 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 DIO1P49895 249 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 MRPS15P82914 257 aaKnown RBP10.51□□□□□ -0.73
VRK3-223ENST00000601341 PITPNAQ00169 270 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 FOXF1Q12946 379 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 PON3Q15166 354 aa10.51□□□□□ -0.73
VRK3-223ENST00000601341 TATDN3Q17R31 274 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms