RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PLPP3O14495 311 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 SEC14L2O76054 403 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 HPXP02790 462 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 SAGP10523 405 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-212ENST00000597995 COL8A2P25067 703 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 FXNQ16595 210 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 USP43Q70EL4 1123 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 TEX29Q8N6K0 151 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 POU5F2Q8N7G0 328 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 SCAIQ8N9R8 606 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF418Q8TF45 676 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ZMYND19Q96E35 227 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-212ENST00000597995 EPYCQ99645 322 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ECSITQ9BQ95 431 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF426Q9BUY5 554 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF416Q9BWM5 594 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 MED29Q9NX70 200 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 SELENONQ9NZV5 590 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 FBXL3Q9UKT7 428 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF346Q9UL40 294 aaKnown RBP10.74□□□□□ -0.69
TRIM28-212ENST00000597995 SLC7A7Q9UM01 511 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 POFUT2Q9Y2G5 429 aa10.74□□□□□ -0.69
TRIM28-212ENST00000597995 TENM1Q9UKZ4 2725 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 TRAV20A0A0B4J274 112 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 TMEM89A2RUT3 159 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 TRAPPC13A5PLN9 417 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 BBIP1A8MTZ0 92 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 FAM157AC9JC47 383 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SHOX2O60902 331 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 NPPAP01160 153 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 GAAP10253 952 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 NQO1P15559 274 aaKnown RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 TCN1P20061 433 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 MDH1P40925 334 aaKnown RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ALDH3B1P43353 468 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SEC24CP53992 1094 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 LMO4P61968 165 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 RAB1AP62820 205 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 GALK2Q01415 458 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 PIGFQ07326 219 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 PUDPQ08623 228 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 PMS2P3Q13401 168 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF74Q16587 644 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 MMEL1Q495T6 779 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 INTS11Q5TA45 600 aaKnown RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 GKAP1Q5VSY0 366 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 CARD17Q5XLA6 110 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SHQ1Q6PI26 577 aaKnown RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF813Q6ZN06 617 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 CARM1Q86X55 608 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 LRRC17Q8N6Y2 441 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 OR51F2Q8NH61 342 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 FAM216AQ8WUB2 273 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 LRRC37BQ96QE4 947 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 FOXB1Q99853 325 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SH3GL1Q99961 368 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SYT3Q9BQG1 590 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ASPNQ9BXN1 380 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 MEPEQ9NQ76 525 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF275Q9NSD4 429 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-212ENST00000597995 CMTM6Q9NX76 183 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 TAS2R5Q9NYW4 299 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 SLC7A8Q9UHI5 535 aa10.73□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF726A6NNF4 738 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 WIPF1O43516 503 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 UBL3O95164 117 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 RAB36O95755 333 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 CH25HO95992 272 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 MT-ATP6P00846 226 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 SERPINA5P05154 406 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 ANPEPP15144 967 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 FUT4P22083 530 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 LSP1P33241 339 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 PTDSS1P48651 473 aaKnown RBP10.72□□□□□ -0.69
TRIM28-212ENST00000597995 MAPRE2Q15555 327 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 PIWIL3Q7Z3Z3 882 aaKnown RBP10.72□□□□□ -0.69
TRIM28-212ENST00000597995 PXKQ7Z7A4 578 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 LRP11Q86VZ4 500 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 TREML1Q86YW5 311 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 NKAIN4Q8IVV8 208 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 C10orf53Q8N6V4 93 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 OR6N1Q8NGY5 312 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 OR5J2Q8NH18 312 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 SGMS2Q8NHU3 365 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 SLC26A7Q8TE54 656 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 YIPF5Q969M3 257 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 RCN3Q96D15 328 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 JMJD8Q96S16 334 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 ULBP2Q9BZM5 246 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 MED4Q9NPJ6 270 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 MRGBPQ9NV56 204 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 TREM2Q9NZC2 230 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 ZNF224Q9NZL3 707 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 PCDHB10Q9UN67 800 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 SH3GLB1Q9Y371 365 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 CAPN7Q9Y6W3 813 aa10.72□□□□□ -0.69
TRIM28-212ENST00000597995 FAM220BPB1ANY3 271 aa10.71□□□□□ -0.69
TRIM28-212ENST00000597995 C11orf98E9PRG8 122 aa10.71□□□□□ -0.69
TRIM28-212ENST00000597995 TRIM77I1YAP6 450 aa10.71□□□□□ -0.69
TRIM28-212ENST00000597995 KPNA4O00629 521 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms