RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 IGFN1Q86VF2 1251 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 HDAC2Q92769 488 aaKnown RBP22.54■■□□□ 1.2
TRIM28-204ENST00000594806 RADILQ96JH8 1075 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 SPG11Q96JI7 2443 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 CADP27708 2225 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 A0A096LPE4 126 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 A0A1W2PPZ6 126 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 ARRDC5A6NEK1 342 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF84P51523 738 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 RPS6KA3P51812 740 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 ERVK-25P63136 954 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 C10orf128Q5T292 105 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF813Q6ZN06 617 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 FAM122BQ7Z309 247 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 FANK1Q8TC84 345 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 DUS3LQ96G46 650 aaKnown RBP22.53■■□□□ 1.2
TRIM28-204ENST00000594806 HS3ST6Q96QI5 342 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 DGCR6LQ9BY27 220 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 OR52D1Q9H346 318 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 NPAP1Q9NZP6 1156 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 DNAJB9Q9UBS3 223 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 RNF115Q9Y4L5 304 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 U3KQV3 271 aa22.53■■□□□ 1.2
TRIM28-204ENST00000594806 A0A1W2PR80 420 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 DPRXA6NFQ7 191 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 XKRYO14609 159 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 IMPA2O14732 288 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 GSTM3P21266 225 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 SDHAP31040 664 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 SLC6A6P31641 620 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 FXYD6P3P58550 94 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 BSPH1Q075Z2 132 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 CD47Q08722 323 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 SYT14Q8NB59 555 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 OR9Q2Q8NGE9 314 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 NANOS1Q8WY41 292 aaKnown RBP22.52■■□□□ 1.2
TRIM28-204ENST00000594806 SLCO4A1Q96BD0 722 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 NMD3Q96D46 503 aaKnown RBP22.52■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF570Q96NI8 536 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 DENND2DQ9H6A0 471 aaPredicted RBP22.52■■□□□ 1.2
TRIM28-204ENST00000594806 VNN3Q9NY84 501 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 FBN2P35556 2912 aa22.52■■□□□ 1.2
TRIM28-204ENST00000594806 FARS2O95363 451 aaKnown RBP22.51■■□□□ 1.19
TRIM28-204ENST00000594806 TXNDC12O95881 172 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 GASTP01350 101 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ADAM5Q6NVV9 412 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 THSD4Q6ZMP0 1018 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ZNF704Q6ZNC4 412 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ZNF620Q6ZNG0 422 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 YTHDF3Q7Z739 585 aaKnown RBP22.51■■□□□ 1.19
TRIM28-204ENST00000594806 DPPA2Q7Z7J5 298 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 AQP11Q8NBQ7 271 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 GIPC3Q8TF64 312 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ARMC1Q9NVT9 282 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 TMEM38BQ9NVV0 291 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 CRNNQ9UBG3 495 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ADAM18Q9Y3Q7 739 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 NAV2Q8IVL1 2488 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 AKAP6Q13023 2319 aa22.51■■□□□ 1.19
TRIM28-204ENST00000594806 ROS1P08922 2347 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 A0A1W2PPR1 153 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 ARPC3O15145 178 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 ARHGEF9O43307 516 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 IDH3BO43837 385 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 DEAF1O75398 565 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-204ENST00000594806 OR8G3PP0DMU2 310 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 CBR1P16152 277 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 CD40P25942 277 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 ZNF83P51522 516 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 ARHGDIAP52565 204 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 COX10Q12887 443 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 PPP1R8Q12972 351 aaKnown RBP22.5■■□□□ 1.19
TRIM28-204ENST00000594806 RASSF6Q6ZTQ3 369 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 ADCK1Q86TW2 530 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 CLDN22Q8N7P3 220 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 OR10G2Q8NGC3 310 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 NINJ1Q92982 152 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 Q96M85 177 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 IL20Q9NYY1 176 aa22.5■■□□□ 1.19
TRIM28-204ENST00000594806 M0R1B8 84 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 E2F6O75461 281 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 B4GALT1P15291 398 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 NPR2P20594 1047 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 ARR3P36575 388 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 MYBPC1Q00872 1141 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 SLC25A47Q6Q0C1 308 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 CD300LDQ6UXZ3 194 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 CDH24Q86UP0 819 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 DEPDC4Q8N2C3 294 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 SLC22A24Q8N4F4 322 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 OR52L1Q8NGH7 329 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 UTP4Q969X6 686 aaKnown RBP22.49■■□□□ 1.19
TRIM28-204ENST00000594806 NRBF2Q96F24 287 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 IER3IP1Q9Y5U9 82 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 CDH10Q9Y6N8 788 aa22.49■■□□□ 1.19
TRIM28-204ENST00000594806 IGKV3-15P01624 115 aa22.48■■□□□ 1.19
TRIM28-204ENST00000594806 GUCA1AP43080 201 aaPredicted RBP22.48■■□□□ 1.19
TRIM28-204ENST00000594806 MRPS34P82930 218 aaKnown RBP22.48■■□□□ 1.19
TRIM28-204ENST00000594806 KRR1Q13601 381 aaKnown RBP22.48■■□□□ 1.19
TRIM28-204ENST00000594806 CCNIQ14094 377 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms