RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 THEM4Q5T1C6 240 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 OR2T5Q6IEZ7 315 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 SLC22A25Q6T423 547 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 SPATA24Q86W54 205 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ARIH2OSQ8N7S6 290 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ZNF611Q8N823 705 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 OR2T29Q8NH02 315 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 LILRB1Q8NHL6 650 aaPredicted RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 CANT1Q8WVQ1 401 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 NANOS1Q8WY41 292 aaKnown RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 HDAC2Q92769 488 aaKnown RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 MBD6Q96DN6 1003 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 RSRC1Q96IZ7 334 aaKnown RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 KCNK17Q96T54 332 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ALG12Q9BV10 488 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 KATNB1Q9BVA0 655 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 DENND2DQ9H6A0 471 aaPredicted RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 YY1AP1Q9H869 796 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 REEP1Q9H902 201 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 SMURF2Q9HAU4 748 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 CRNNQ9UBG3 495 aaPredicted RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 LYVE1Q9Y5Y7 322 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 PDZD2O15018 2839 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 AHCYL1O43865 530 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 SEC14L2O76054 403 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 CCNB2O95067 398 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 FARS2O95363 451 aaKnown RBP13.11□□□□□ -0.31
UPF1-202ENST00000594243 CST1P01037 141 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 OR8G3PP0DMU2 310 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 B4GALT1P15291 398 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 CD53P19397 219 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 FPR3P25089 353 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 ZNF133P52736 654 aaPredicted RBP13.11□□□□□ -0.31
UPF1-202ENST00000594243 ERVK-25P63136 954 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 MYBPC1Q00872 1141 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 CD47Q08722 323 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 NRN1LQ496H8 165 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 GPR139Q6DWJ6 353 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 SMARCD3Q6STE5 483 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 DPY19L2P2Q6ZN68 376 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 ADGRG5Q8IZF4 528 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 SLC22A24Q8N4F4 322 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 KBTBD8Q8NFY9 601 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 FBXW5Q969U6 566 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 SLC38A2Q96QD8 506 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 TSPAN32Q96QS1 320 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 GPX7Q96SL4 187 aaPredicted RBP13.11□□□□□ -0.31
UPF1-202ENST00000594243 KCNS3Q9BQ31 491 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 NRIP3Q9NQ35 241 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 CISD1Q9NZ45 108 aaKnown RBP13.11□□□□□ -0.31
UPF1-202ENST00000594243 SLC7A8Q9UHI5 535 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 POU2F3Q9UKI9 436 aa13.11□□□□□ -0.31
UPF1-202ENST00000594243 IGHV1-18A0A0C4DH31 117 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 SHISA9B4DS77 424 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 XKRYO14609 159 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 GNGT2O14610 69 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 ARHGEF9O43307 516 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 UBL3O95164 117 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 IGKV3-15P01624 115 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 CRYAAP02489 173 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 CD79AP11912 226 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 ZNF26P17031 533 aaPredicted RBP13.1□□□□□ -0.31
UPF1-202ENST00000594243 GUCA1AP43080 201 aaPredicted RBP13.1□□□□□ -0.31
UPF1-202ENST00000594243 RPS6KA3P51812 740 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 TUBA1BP68363 451 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 TUBA4AP68366 448 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 TSPAN31Q12999 210 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 MICAQ29983 383 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 GSG1Q2KHT4 349 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 DEFB113Q30KQ7 82 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 RFX4Q33E94 735 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 C10orf128Q5T292 105 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 PGBD2Q6P3X8 592 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 CCDC121Q6ZUS5 278 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 TUBA1AQ71U36 451 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 DPPA2Q7Z7J5 298 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 IL17RDQ8NFM7 739 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 OR4C15Q8NGM1 316 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 ZNF519Q8TB69 540 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 ZNF570Q96NI8 536 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 CCL19Q99731 98 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 GPA33Q99795 319 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 FOXC2Q99958 501 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 LRMDAQ9H2I8 198 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 FAIMQ9NVQ4 179 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 TMEM38BQ9NVV0 291 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 BEX4Q9NWD9 120 aaPredicted RBP13.1□□□□□ -0.31
UPF1-202ENST00000594243 B3GNT2Q9NY97 397 aa13.1□□□□□ -0.31
UPF1-202ENST00000594243 SAMHD1Q9Y3Z3 626 aaKnown RBP13.1□□□□□ -0.31
UPF1-202ENST00000594243 TCRBV3S1A0A5B6 114 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 TMCC2O75069 709 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 IGLV1-44P01699 117 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 NPR2P20594 1047 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 SDHAP31040 664 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 SLC6A6P31641 620 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 GSSP48637 474 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 ART1P52961 327 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 CDH11P55287 796 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 RAB1AP62820 205 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 FAM122BQ7Z309 247 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms