RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ACOT13Q9NPJ3 140 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 SLC22A11Q9NSA0 550 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 CNOT2Q9NZN8 540 aaKnown RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 MRPS18BQ9Y676 258 aaKnown RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 FITM1A5D6W6 292 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 C1orf196B1AJZ1 125 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ATP6V1G2-DDX39BF2Z307 99 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 RGS9O75916 674 aaPredicted RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 SPINK2P20155 84 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 AZGP1P25311 298 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 RAC1P63000 192 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TAGLNQ01995 201 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 RPL18Q07020 188 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 NADK2Q4G0N4 442 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 OR5T1Q8NG75 326 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 S100A16Q96FQ6 103 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 ZNF681Q96N22 645 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 NIPSNAP1Q9BPW8 284 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 MICU1Q9BPX6 476 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 MED20Q9H944 212 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 IL17BQ9UHF5 180 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 NDRG4Q9ULP0 352 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 ALG5Q9Y673 324 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TCF20Q9UGU0 1960 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 CEP250Q9BV73 2442 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 MRPS14O60783 128 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 FZD7O75084 574 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 GABRA1P14867 456 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 PSG6Q00889 435 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ZNF91Q05481 1191 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 MFAP5Q13361 173 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 EMC4Q5J8M3 183 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 Q6ZPB1 254 aaPredicted RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 DPY19L4Q7Z388 723 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TMEM99Q8N816 258 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 SLC37A3Q8NCC5 494 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 SLC35B4Q969S0 331 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FOXJ2Q9P0K8 574 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 EXO1Q9UQ84 846 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 HS3ST3B1Q9Y662 390 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FAM240BA0A1B0GVZ2 78 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TMEM72A0PK05 275 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 METTL15A6NJ78 407 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TXNL1O43396 289 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 QDPRP09417 244 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FZD5Q13467 585 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 E2F2Q14209 437 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 TBC1D28Q2M2D7 210 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 NKAPLQ5M9Q1 402 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 NXNL2Q5VZ03 156 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FAM57BQ71RH2 274 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FAM109AQ8N4B1 249 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 CISD2Q8N5K1 135 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 TFAP2CQ92754 450 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 DPF1Q92782 380 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 INTS12Q96CB8 462 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 CLCC1Q96S66 551 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ARHGDIGQ99819 225 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ZNF700Q9H0M5 742 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 WDR76Q9H967 626 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 GREB1Q4ZG55 1949 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 IGHV3-15A0A0B4J1V0 119 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 A0A0X1KG70 313 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 A0A1W2PS29 197 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 CSN2P05814 226 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 OR2T7P0C7T2 308 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 PSMB10P40306 273 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FOXL2P58012 376 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 RPS23P62266 143 aaKnown RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 CLN3Q13286 438 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 DYRK1AQ13627 763 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ZNF169Q14929 603 aaPredicted RBP8.92□□□□□ -0.98
LIG3-216ENST00000593099 RSU1Q15404 277 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 SLX4IPQ5VYV7 408 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 MSRB3Q8IXL7 192 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 ZNF611Q8N823 705 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 OR2T27Q8NH04 317 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FCRL1Q96LA6 429 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FN3KQ9H479 309 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 FBXO34Q9NWN3 711 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 DNAJB11Q9UBS4 358 aa8.92□□□□□ -0.98
LIG3-216ENST00000593099 NUP214P35658 2090 aaPredicted RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 SPTBP11277 2137 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 A0A087WUJ7 227 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ASPDHA6ND91 283 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 CD8B2A6NJW9 211 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 SHISA8B8ZZ34 492 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 HRKO00198 91 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 CD8BP10966 210 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 RNPS1Q15287 305 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 CNN3Q15417 329 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 SLC35D3Q5M8T2 416 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 GLB1L2Q8IW92 636 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF321PQ8N8H1 164 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 NINJ1Q92982 152 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 C3orf49Q96BT1 292 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 MED28Q9H204 178 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 DUSP13Q9UII6 198 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 CES1P1Q9UKY3 287 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 PCDHB10Q9UN67 800 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms