RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 IGFN1Q86VF2 1251 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 ZNF611Q8N823 705 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 SYT14Q8NB59 555 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 AKAP1Q92667 903 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIG3-213ENST00000590630 PIGTQ969N2 578 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 RSRC1Q96IZ7 334 aaKnown RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 GPX7Q96SL4 187 aaPredicted RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 ALG12Q9BV10 488 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 KATNB1Q9BVA0 655 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 C1QTNF6Q9BXI9 259 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 CADM1Q9BY67 442 aaKnown RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 MMADHCQ9H3L0 296 aaPredicted RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 SMURF2Q9HAU4 748 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 CRNNQ9UBG3 495 aaPredicted RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 POMPQ9Y244 141 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 LYVE1Q9Y5Y7 322 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 PRRC2AP48634 2157 aaKnown RBP10.39□□□□□ -0.75
LIG3-213ENST00000590630 VPS13CQ709C8 3753 aa10.39□□□□□ -0.75
LIG3-213ENST00000590630 UNC119BA6NIH7 251 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SHISA9B4DS77 424 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 TNFRSF11BO00300 401 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 PTP4A3O75365 173 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SEC14L2O76054 403 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 IGKV3-15P01624 115 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 IGLV1-44P01699 117 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ZNF26P17031 533 aaPredicted RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 CD53P19397 219 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ARR3P36575 388 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ACVR1BP36896 505 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ZNF84P51523 738 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 CD47Q08722 323 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 GK3PQ14409 553 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 C10orf128Q5T292 105 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 OR2T5Q6IEZ7 315 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 C1orf94Q6P1W5 598 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SMARCD3Q6STE5 483 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SLC22A25Q6T423 547 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ADGRG5Q8IZF4 528 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 DEPDC4Q8N2C3 294 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ARIH2OSQ8N7S6 290 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 KBTBD8Q8NFY9 601 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 OR2T29Q8NH02 315 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 LILRB1Q8NHL6 650 aaPredicted RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 ZNF519Q8TB69 540 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 NANOS1Q8WY41 292 aaKnown RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 HDAC2Q92769 488 aaKnown RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 FBXW5Q969U6 566 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 MCHR2Q969V1 340 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SLC38A2Q96QD8 506 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 TSPAN32Q96QS1 320 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 KCNK17Q96T54 332 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 CCL19Q99731 98 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 FOXC2Q99958 501 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 LRMDAQ9H2I8 198 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 DENND2DQ9H6A0 471 aaPredicted RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 REEP1Q9H902 201 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 NRIP3Q9NQ35 241 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 TMEM38BQ9NVV0 291 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 GRHPRQ9UBQ7 328 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 SLC7A8Q9UHI5 535 aa10.38□□□□□ -0.75
LIG3-213ENST00000590630 ZNF346Q9UL40 294 aaKnown RBP10.38□□□□□ -0.75
LIG3-213ENST00000590630 IGHV1-18A0A0C4DH31 117 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 XKRYO14609 159 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 AHCYL1O43865 530 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 MGRN1O60291 552 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 TMCC2O75069 709 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 FARS2O95363 451 aaKnown RBP10.37□□□□□ -0.75
LIG3-213ENST00000590630 OR8G3PP0DMU2 310 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 CBR1P16152 277 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 SDHAP31040 664 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 CAPZA2P47755 286 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 GSSP48637 474 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 CDH11P55287 796 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 ERVK-25P63136 954 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 TUBA1BP68363 451 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 TUBA4AP68366 448 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 GSG1Q2KHT4 349 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 DEFB113Q30KQ7 82 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 THEM4Q5T1C6 240 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 GPR139Q6DWJ6 353 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 PGBD2Q6P3X8 592 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 DPY19L2P2Q6ZN68 376 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 TUBA1AQ71U36 451 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 FAM122BQ7Z309 247 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 DPPA2Q7Z7J5 298 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 SPATA24Q86W54 205 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 SLC22A24Q8N4F4 322 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 OR4C15Q8NGM1 316 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 FANK1Q8TC84 345 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 GNPDA2Q8TDQ7 276 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 CANT1Q8WVQ1 401 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 NMD3Q96D46 503 aaKnown RBP10.37□□□□□ -0.75
LIG3-213ENST00000590630 ZNF570Q96NI8 536 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 RBP7Q96R05 134 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 GPA33Q99795 319 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 KCNS3Q9BQ31 491 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 CHID1Q9BWS9 393 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 YY1AP1Q9H869 796 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 FAIMQ9NVQ4 179 aa10.37□□□□□ -0.75
LIG3-213ENST00000590630 BEX4Q9NWD9 120 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms