RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 EMC6Q9BV81 110 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 SRXN1Q9BYN0 137 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 TTTY12Q9BZ98 90 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 RNF167Q9H6Y7 350 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 ZNF703Q9H7S9 590 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 EXOSC4Q9NPD3 245 aaKnown RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 STUB1Q9UNE7 303 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 PCDHGB7Q9Y5F8 929 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 NCOA6Q14686 2063 aaPredicted RBP9.4□□□□□ -0.91
SS18-217ENST00000580958 VGLL3A8MV65 326 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 ZNF670-ZNF695F2Z2N8 137 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 H0YC42 278 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 KLRC4-KLRK1H3BQV0 150 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 EIF1AYO14602 144 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 MAGEB4O15481 346 aaPredicted RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 LRRTM2O43300 516 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TLX3O43711 291 aaPredicted RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 GLSO94925 669 aaPredicted RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 MT-ND5P03915 603 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 HPNP05981 417 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 CELA3AP09093 270 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 POU3F2P20265 443 aaPredicted RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 CRYBB2P43320 205 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 SERPINB10P48595 397 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 SUCLG1P53597 346 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 OR12D2P58182 307 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 FMODQ06828 376 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 ACSM1Q08AH1 577 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 CAMK2DQ13557 499 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 ETFDHQ16134 617 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TIMM50Q3ZCQ8 353 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TP53I3Q53FA7 332 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 HBMQ6B0K9 141 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TMEM225Q6GV28 225 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TIGD4Q8IY51 512 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 UBQLNLQ8IYU4 475 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TMEM251Q8N6I4 163 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 FDCSPQ8NFU4 85 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 OR6N2Q8NGY6 317 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 OR2V1Q8NHB1 315 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 HAS2Q92819 552 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 ZHX1-C8orf76Q96EF9 292 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TRMT61AQ96FX7 289 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 SCMH1Q96GD3 660 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 C4orf36Q96KX1 117 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 UCN2Q96RP3 112 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 INTS14Q96SY0 518 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 CENPOQ9BU64 300 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 TSPAN10Q9H1Z9 355 aaPredicted RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 DCSTAMPQ9H295 470 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 SLC6A15Q9H2J7 730 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 CCDC86Q9H6F5 360 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 MARCH7Q9H992 704 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 BABAM2Q9NXR7 383 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 KLHL13Q9P2N7 655 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 ZMIZ1Q9ULJ6 1067 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 RASD1Q9Y272 281 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 KLHDC2Q9Y2U9 406 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 SF3B6Q9Y3B4 125 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 URB1O60287 2271 aaKnown RBP9.39□□□□□ -0.91
SS18-217ENST00000580958 ARHGAP21Q5T5U3 1957 aa9.39□□□□□ -0.91
SS18-217ENST00000580958 LOC102725191A0A1B0GVB3 256 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 PRR32B1ATL7 298 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 E9PI62 339 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 KLK10O43240 276 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 EFSO43281 561 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 EIF1BO60739 113 aaKnown RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 KHDRBS3O75525 346 aaKnown RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 HLA-DQA2P01906 255 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 PSKH1P11801 424 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 ZNF43P17038 809 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 CRABP1P29762 137 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 UGT2B10P36537 528 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 PEX19P40855 299 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 MAGEA5P43359 124 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 CD97P48960 835 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 TNFSF10P50591 281 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 AGFG1P52594 562 aaKnown RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 GFRA1P56159 465 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 CLDN17P56750 224 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 H3F3AP84243 136 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 HSF2Q03933 536 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 CDONQ4KMG0 1287 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 OTPQ5XKR4 325 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 VASNQ6EMK4 673 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 DNM1P34Q6PK57 102 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 ESPNLQ6ZVH7 1005 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 USP43Q70EL4 1123 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 VASH1Q7L8A9 365 aaPredicted RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 CDC20BQ86Y33 519 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 NOXO1Q8NFA2 376 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 TMEM203Q969S6 136 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 ADGRG7Q96K78 797 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 ADAD1Q96M93 576 aaKnown RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 WDR76Q9H967 626 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 TRIM36Q9NQ86 728 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 MRPL22Q9NWU5 206 aaKnown RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 GNG8Q9UK08 70 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms