RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GPR119Q8TDV5 335 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 THEM6Q8WUY1 208 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 METTL21AQ8WXB1 218 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 NSMAFQ92636 917 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 SLC25A36Q96CQ1 311 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 MED28Q9H204 178 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ZNF768Q9H5H4 540 aaKnown RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 ZNF275Q9NSD4 429 aaPredicted RBP9.11□□□□□ -0.95
VPS53-220ENST00000576149 CTSFQ9UBX1 484 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 OR5V1Q9UGF6 321 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 B9D1Q9UPM9 204 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 TMED7Q9Y3B3 224 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 FKBP7Q9Y680 259 aa9.11□□□□□ -0.95
VPS53-220ENST00000576149 ABCA7Q8IZY2 2146 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 PRUNE2Q8WUY3 3088 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SPAG17Q6Q759 2223 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 TRBV5-7A0A0A0MS05 114 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 PRSS37A4D1T9 235 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 TMEM212A6NML5 194 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 A8MVM7 634 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SMLR1H3BR10 107 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 DXOO77932 396 aaKnown RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 RAF1P04049 648 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 RAB40ALP0C0E4 278 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SOX2P48431 317 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 CCR6P51684 374 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 RPL27P61353 136 aaKnown RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 ACKR1Q16570 336 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 STPG1Q5TH74 334 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 C1orf140Q5VVS0 124 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 FAM205BPQ63HN1 556 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 COX15Q7KZN9 410 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 LINGO2Q7L985 606 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 GRINAQ7Z429 371 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 PRSS35Q8N3Z0 413 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 RAB40AQ8WXH6 277 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 S100A16Q96FQ6 103 aaKnown RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 SHDQ96IW2 340 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 OR2M2Q96R28 347 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 AMELYQ99218 206 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 NUDT22Q9BRQ3 303 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SLC22A11Q9NSA0 550 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SLCO1C1Q9NYB5 712 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 KCNG2Q9UJ96 466 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 GABARAPH6UMI1 98 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SULT1B1O43704 296 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 PLGP00747 810 aaPredicted RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 MT-ND4P03905 459 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 STOMP27105 288 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 RNF4P78317 190 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 RASGEF1BQ0VAM2 473 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SHISA6Q6ZSJ9 500 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SERPINA12Q8IW75 414 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 ZNF676Q8N7Q3 588 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 SYNPRQ8TBG9 265 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 DUSP19Q8WTR2 217 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 DCBLD2Q96PD2 775 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 COMMD4Q9H0A8 199 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 TXNIPQ9H3M7 391 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 TAS2R10Q9NYW0 307 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 AKAP7Q9P0M2 348 aaPredicted RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 WNT16Q9UBV4 365 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 ING1Q9UK53 422 aaPredicted RBP9.1□□□□□ -0.95
VPS53-220ENST00000576149 FOXJ3Q9UPW0 622 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 ETV7Q9Y603 341 aa9.1□□□□□ -0.95
VPS53-220ENST00000576149 ZNF593O00488 134 aaPredicted RBP9.09□□□□□ -0.95
VPS53-220ENST00000576149 H2AFB2P0C5Z0 115 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 PTH2RP49190 550 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 INSM1Q01101 510 aaPredicted RBP9.09□□□□□ -0.95
VPS53-220ENST00000576149 GSG1Q2KHT4 349 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 CD276Q5ZPR3 534 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 LAMTOR1Q6IAA8 161 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 RHBDD2Q6NTF9 364 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 FDX2Q6P4F2 183 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 LRRN1Q6UXK5 716 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 LRRC69Q6ZNQ3 347 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 DND1Q8IYX4 353 aaKnown RBP9.09□□□□□ -0.95
VPS53-220ENST00000576149 SIX5Q8N196 739 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 EID2Q8N6I1 236 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 OR11H7Q8NGC8 314 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 OR10AC1Q8NH08 325 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 OR52I2Q8NH67 350 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 GRPEL2Q8TAA5 225 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 ZNF417Q8TAU3 575 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 STT3BQ8TCJ2 826 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 STK35Q8TDR2 534 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 GPR148Q8TDV2 347 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 MIB2Q96AX9 1013 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 HAVCR1Q96D42 359 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 C4orf45Q96LM5 186 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 HYLS1Q96M11 299 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 ACTR6Q9GZN1 396 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 OR51J1Q9H342 316 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 VSX1Q9NZR4 365 aaPredicted RBP9.09□□□□□ -0.95
VPS53-220ENST00000576149 KLHL9Q9P2J3 617 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 SRPK3Q9UPE1 567 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 SEC16AO15027 2179 aa9.09□□□□□ -0.95
VPS53-220ENST00000576149 TRAV8-7A0A075B6U6 113 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 IGLV1-36A0A0B4J1U3 117 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 IGHV3-20A0A0C4DH32 117 aa9.09□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms