RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RHNO1Q9BSD3 238 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 WACQ9BTA9 647 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR11A1Q9GZK7 315 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 TSPAN10Q9H1Z9 355 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 MMP27Q9H306 513 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 WDR76Q9H967 626 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 MARCH7Q9H992 704 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ACKR4Q9NPB9 350 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 RPRD1BQ9NQG5 326 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 DLL3Q9NYJ7 618 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 B9D1Q9UPM9 204 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ADAM18Q9Y3Q7 739 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 FRYLO94915 3013 aa7.15□□□□□ -1.27
VPS39-213ENST00000570062 ASCC3Q8N3C0 2202 aaKnown RBP7.15□□□□□ -1.27
VPS39-213ENST00000570062 TRDV1A0A1B0GX56 115 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SLC22A23A1A5C7 686 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 C11orf98E9PRG8 122 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 H3BML4 177 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 EFSO43281 561 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 PLPP2O43688 288 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 NME2P1O60361 137 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ZNF254O75437 659 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 TRAPPC6AO75865 159 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 GATBO75879 557 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 CLPXO76031 633 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 AQP8O94778 261 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ZNF432O94892 652 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ATE1O95260 518 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 WDPCPO95876 746 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 IL1AP01583 271 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 KRT8P05787 483 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 PTNP21246 168 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 NME2P22392 152 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ENPP1P22413 925 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 CFL1P23528 166 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 GDF1P27539 372 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 TGFBR2P37173 567 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 TGM4P49221 684 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 CARD18P57730 90 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ARG2P78540 354 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 H3F3AP84243 136 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ROR2Q01974 943 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 RUNX1T1Q06455 604 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 MOGQ16653 247 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 CDONQ4KMG0 1287 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 MESTQ5EB52 335 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 C1QL3Q5VWW1 255 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SLC18B1Q6NT16 456 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 CD200R1LQ6Q8B3 271 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 IGFL2Q6UWQ7 119 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SLC16A12Q6ZSM3 486 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 MDGA2Q7Z553 956 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SYT9Q86SS6 491 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 EXD3Q8N9H8 876 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ZNF485Q8NCK3 441 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ATP6V1C2Q8NEY4 427 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 BBS1Q8NFJ9 593 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SPRYD4Q8WW59 207 aaPredicted RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 ASB10Q8WXI3 467 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 GATAD2BQ8WXI9 593 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 AP3S1Q92572 193 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 RASD2Q96D21 266 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 ARL5BQ96KC2 179 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 KCTD7Q96MP8 289 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 DACH2Q96NX9 599 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 OR5M11Q96RB7 305 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 INTS14Q96SY0 518 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 TTYH2Q9BSA4 534 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 MED18Q9BUE0 208 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 SRA1Q9HD15 236 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 CCDC59Q9P031 241 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 CRNNQ9UBG3 495 aaPredicted RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 CLEC2DQ9UHP7 191 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 LAMP5Q9UJQ1 280 aa7.14□□□□□ -1.27
VPS39-213ENST00000570062 MRPS18BQ9Y676 258 aaKnown RBP7.14□□□□□ -1.27
VPS39-213ENST00000570062 EP300Q09472 2414 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 COL27A1Q8IZC6 1860 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 TRAV17A0A0B4J275 112 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 PNMA8CA0A1B0GUJ8 204 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 A0A1W2PPW3 197 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 A0A1W2PQL4 384 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 TRABD2BA6NFA1 517 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 METTL15A6NJ78 407 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ARGFXA6NJG6 315 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 NPIPA2E9PIF3 369 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 NPIPA3F8WFD2 350 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 GPR171O14626 319 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 OGG1O15527 345 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 EFNA2O43921 213 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SLC16A7O60669 478 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ARL6IP5O75915 188 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 AKR7A3O95154 331 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 HLA-DQA2P01906 255 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 IFNGR1P15260 489 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 POU3F2P20265 443 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 GADD45AP24522 165 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 DCTDP32321 178 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 S100A5P33763 92 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 EIF2S3P41091 472 aaKnown RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 DNASE1L1P49184 302 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms