RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 VSX1Q9NZR4 365 aaPredicted RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 POFUT2Q9Y2G5 429 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 POLQO75417 2590 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 IGLV1-36A0A0B4J1U3 117 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 A0A1W2PRG6 482 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 PRSS37A4D1T9 235 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 CENPBD1B2RD01 187 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 M0R129 80 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SMNDC1O75940 238 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS35-211ENST00000569950 AGFG2O95081 481 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SNAP29O95721 258 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SCG5P05408 212 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 THBDP07204 575 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 PSKH1P11801 424 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 CTLA4P16410 223 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 PSMB1P20618 241 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 IGFBP5P24593 272 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 RPL4P36578 427 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 ACVR1BP36896 505 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 DAP3P51398 398 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 SMSP52788 366 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 ESRRGP62508 458 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 MYBPC1Q00872 1141 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SLC34A1Q06495 639 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 KRR1Q13601 381 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 GINS1Q14691 196 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 PTGES3Q15185 160 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 ETFDHQ16134 617 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 GABRA6Q16445 453 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SLC35F1Q5T1Q4 408 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 SLX4IPQ5VYV7 408 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 CARD17Q5XLA6 110 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 C12orf73Q69YU5 71 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 GPR139Q6DWJ6 353 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 RPL13AP3Q6NVV1 102 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 CXorf67Q86X51 503 aaPredicted RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 SYT14Q8NB59 555 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 HTRA1Q92743 480 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 MCHR2Q969V1 340 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 NABP1Q96AH0 204 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 ZNF570Q96NI8 536 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 TSSK2Q96PF2 358 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 ERMAPQ96PL5 475 aaPredicted RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 SNX18Q96RF0 628 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 RBM4BQ9BQ04 359 aaKnown RBP8.16□□□□□ -1.1
VPS35-211ENST00000569950 C9orf16Q9BUW7 83 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 ALG12Q9BV10 488 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 IFT27Q9BW83 186 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 KRT84Q9NSB2 600 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 TBC1D23Q9NUY8 699 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 PARPBPQ9NWS1 579 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 GLTPQ9NZD2 209 aa8.16□□□□□ -1.1
VPS35-211ENST00000569950 AKAP6Q13023 2319 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 EEF1E1-BLOC1S5C9J1V9 151 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 M0R3G1 203 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SURF4O15260 269 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 EEF1E1O43324 174 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 IDH3BO43837 385 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SLC43A1O75387 559 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 LYZL6O75951 148 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 GRK5P34947 590 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 UGT2B10P36537 528 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CD79BP40259 229 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CSNK1A1P48729 337 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ARHGDIAP52565 204 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 IL1RL1Q01638 556 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ROR2Q01974 943 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 FAPQ12884 760 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 NPRL3Q12980 569 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SNTB1Q13884 538 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 CRMP1Q14194 572 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 LRRC36Q1X8D7 754 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CEACAM16Q2WEN9 425 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SFRP5Q5T4F7 317 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 LINC01590Q5TEZ4 76 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 FAM205BPQ63HN1 556 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ZBTB49Q6ZSB9 765 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ZBTB46Q86UZ6 589 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ZNF100Q8IYN0 542 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 OR6V1Q8N148 313 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 WDR31Q8NA23 367 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 POMGNT2Q8NAT1 580 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CYB561A3Q8NBI2 242 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SLC37A3Q8NCC5 494 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 SDR9C7Q8NEX9 313 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 OR2T33Q8NG76 320 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 OR4K13Q8NH42 304 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 FGFBP3Q8TAT2 258 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CA5BP1Q8WTZ4 195 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 BCL2L2Q92843 193 aaPredicted RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 RNASE6Q93091 150 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 PTP4A1Q93096 173 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 UBE2FQ969M7 185 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 ZNF566Q969W8 418 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 NMNAT3Q96T66 252 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 PITX2Q99697 317 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 RBM24Q9BX46 236 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 SYT4Q9H2B2 425 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 FN3KQ9H479 309 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 TOR3AQ9H497 397 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms