RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AIPO00170 330 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 PDCD5O14737 125 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZFAND5O76080 213 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ADRB1P08588 477 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 SOX2P48431 317 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 CENPAP49450 140 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZXDAP98168 799 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 PUDPQ08623 228 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 OR7A5Q15622 319 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 FAM199XQ6PEV8 388 aaPredicted RBP18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZNF433Q8N7K0 673 aaPredicted RBP18.24■□□□□ 0.51
CLN3-230ENST00000568076 OR10G3Q8NGC4 313 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 OR10AC1Q8NH08 325 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZNF671Q8TAW3 534 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 SLC7A6Q92536 515 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 NEK6Q9HC98 313 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 KLRF1Q9NZS2 232 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TEKT2Q9UIF3 430 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TMEM221A6NGB7 291 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 PHYHO14832 338 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 ITGA10O75578 1167 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 UBL3O95164 117 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 ADRA2CP18825 462 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 KIR3DL2P43630 455 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 SRP9P49458 86 aaKnown RBP18.23■□□□□ 0.51
CLN3-230ENST00000568076 MEP1BQ16820 701 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 SLC36A2Q495M3 483 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 STPG1Q5TH74 334 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 LRRN1Q6UXK5 716 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 STAC2Q6ZMT1 411 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 OR51A4Q8NGJ6 313 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 MFSD8Q8NHS3 518 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 UBASH3BQ8TF42 649 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 NXPE2Q96DL1 559 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 OR8B4Q96RC9 309 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 MARVELD1Q9BSK0 173 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 N6AMT1Q9Y5N5 214 aa18.23■□□□□ 0.51
CLN3-230ENST00000568076 D6RAR5 112 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 ETV2O00321 342 aaPredicted RBP18.22■□□□□ 0.51
CLN3-230ENST00000568076 EFNA2O43921 213 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 SLC6A1P30531 599 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 BTCP35070 178 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 CMTM4Q8IZR5 234 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 BMPERQ8N8U9 685 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 YIPF5Q969M3 257 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 ELOVL3Q9HB03 270 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 V9GY05 133 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 NTN3O00634 580 aaPredicted RBP18.22■□□□□ 0.51
CLN3-230ENST00000568076 DPP4P27487 766 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 MMP15P51511 669 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 DGCR2P98153 550 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 ZP4Q12836 540 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 INPP5JQ15735 1006 aaPredicted RBP18.22■□□□□ 0.51
CLN3-230ENST00000568076 ODF4Q2M2E3 257 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 WDR38Q5JTN6 314 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 UBE2NLQ5JXB2 153 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 UTS2BQ765I0 119 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 C4orf45Q96LM5 186 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 ZFP3Q96NJ6 502 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 DCBLD2Q96PD2 775 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 ABCG5Q9H222 651 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 PPP4R1LQ9P1A2 415 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 C19orf25Q9UFG5 118 aaPredicted RBP18.22■□□□□ 0.51
CLN3-230ENST00000568076 MRPS7Q9Y2R9 242 aaKnown RBP18.22■□□□□ 0.51
CLN3-230ENST00000568076 ALG5Q9Y673 324 aa18.22■□□□□ 0.51
CLN3-230ENST00000568076 H3BSH0 61 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 ZNF208O43345 1280 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 ZNF254O75437 659 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 DKK1O94907 266 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 WNT11O96014 354 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 SPARCP09486 303 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 CD3GP09693 182 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 FBXO45P0C2W1 286 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 HLA-DMAP28067 261 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 CCKBRP32239 447 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 CLDN12P56749 244 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 IL11RAQ14626 422 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 SLC17A1Q14916 467 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 PLA1AQ53H76 456 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 RNASE12Q5GAN4 147 aaKnown RBP18.21■□□□□ 0.51
CLN3-230ENST00000568076 H1FNTQ75WM6 255 aaPredicted RBP18.21■□□□□ 0.51
CLN3-230ENST00000568076 LRRTM1Q86UE6 522 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 IZUMO1Q8IYV9 350 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 ZNF676Q8N7Q3 588 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 ASB10Q8WXI3 467 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 SLC25A38Q96DW6 304 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 ULBP3Q9BZM4 244 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 CAMK2AQ9UQM7 478 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 COA3Q9Y2R0 106 aaPredicted RBP18.21■□□□□ 0.51
CLN3-230ENST00000568076 B3GALT1Q9Y5Z6 326 aa18.21■□□□□ 0.51
CLN3-230ENST00000568076 TRBV5-7A0A0A0MS05 114 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 TMEM212A6NML5 194 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 HSPB2A8KAH6 182 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.21■□□□□ 0.5
CLN3-230ENST00000568076 H3BML4 177 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 MPZL1O95297 269 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 IFNGR1P15260 489 aa18.21■□□□□ 0.5
CLN3-230ENST00000568076 MAPK3P27361 379 aaPredicted RBP18.21■□□□□ 0.5
CLN3-230ENST00000568076 PCOLCEQ15113 449 aa18.21■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms