RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SULT1A4P0DMN0 295 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TCEA1P23193 301 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 RCVRNP35243 200 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 PTGS2P35354 604 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 FAUP35544 74 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 KIR3DL2P43630 455 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 CXCL12P48061 93 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 PTH2RP49190 550 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 MECP2P51608 486 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 RIDAP52758 137 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 TAS2R20P59543 309 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 GPR85P60893 370 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 LCN6P62502 163 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 C17orf67Q0P5P2 114 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 DBPQ10586 325 aaPredicted RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 SNTB2Q13425 540 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 SHBQ15464 509 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 FCN2Q15485 313 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 COL28A1Q2UY09 1125 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 WDR38Q5JTN6 314 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TEX30Q5JUR7 227 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TMEM69Q5SWH9 247 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 HES5Q5TA89 166 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 C1orf189Q5VU69 101 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 DEGS2Q6QHC5 323 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 MAMSTRQ6ZN01 415 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 CREB3L2Q70SY1 520 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 FCRLAQ7L513 359 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 LINGO2Q7L985 606 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 DPY19L4Q7Z388 723 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 KANSL1Q7Z3B3 1105 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SYT9Q86SS6 491 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 LUZP2Q86TE4 346 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 BPHLQ86WA6 291 aaPredicted RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 PM20D2Q8IYS1 436 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ZNF433Q8N7K0 673 aaPredicted RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 ZNF248Q8NDW4 579 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 OR52N5Q8NH56 324 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SYNPRQ8TBG9 265 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 THEM6Q8WUY1 208 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 FCAMRQ8WWV6 532 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 HSD17B8Q92506 261 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 MCHR2Q969V1 340 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ZNF524Q96C55 264 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 MED30Q96HR3 178 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ZFP3Q96NJ6 502 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TSSK2Q96PF2 358 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 NUDT22Q9BRQ3 303 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 UTP23Q9BRU9 249 aaKnown RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 SLC7A5P2Q9GIP4 190 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 NRSN2Q9GZP1 204 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SLC25A18Q9H1K4 315 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TSPAN10Q9H1Z9 355 aaPredicted RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 LIN7BQ9HAP6 207 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ELOVL3Q9HB03 270 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 HRASLSQ9HDD0 168 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SDHAF3Q9NRP4 125 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SLC22A11Q9NSA0 550 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 NUDT15Q9NV35 164 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ALKBH4Q9NXW9 302 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 SLCO1C1Q9NYB5 712 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 TAS2R8Q9NYW2 309 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 CTSFQ9UBX1 484 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 C19orf25Q9UFG5 118 aaPredicted RBP5.64□□□□□ -1.51
CLN3-223ENST00000566472 SUSD2Q9UGT4 822 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 FBXL3Q9UKT7 428 aa5.64□□□□□ -1.51
CLN3-223ENST00000566472 ARHGEF17Q96PE2 2063 aaPredicted RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 MEIKINA0A087WXM9 373 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 A0A0A6YYH2 397 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 A0A0B4J203 849 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 A0A1W2PNV4 684 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 CDC14CA4D256 554 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 MEGF11A6BM72 1044 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 A6NJ64 397 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 VSTM2BA6NLU5 285 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 C4orf47A7E2U8 309 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 NPIPA5E9PKD4 350 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 C11orf98E9PRG8 122 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 SULT1C2O00338 296 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 SLC17A2O00624 439 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 XRCC3O43542 346 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 PRKNO60260 465 aaPredicted RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 SLC16A7O60669 478 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 ZNF780AO75290 641 aaPredicted RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 PEX14O75381 377 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 KHDRBS3O75525 346 aaKnown RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 AQP8O94778 261 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 GLSO94925 669 aaPredicted RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 IL5P05113 134 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 CD2P06729 351 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 SYPP08247 313 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 CD37P11049 281 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 ADRA2CP18825 462 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 PSMB1P20618 241 aaKnown RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 CSRP1P21291 193 aaKnown RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 ACHEP22303 614 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 FKBP2P26885 142 aaKnown RBP5.63□□□□□ -1.51
CLN3-223ENST00000566472 GIFP27352 417 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 DCTDP32321 178 aa5.63□□□□□ -1.51
CLN3-223ENST00000566472 SRP9P49458 86 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms