RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 XAF1Q6GPH4 301 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 ZBTB46Q86UZ6 589 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 ZIC4Q8N9L1 334 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 CDCA4Q9BXL8 241 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 MRPL13Q9BYD1 178 aaKnown RBP27.19■■□□□ 1.94
CTCF-203ENST00000566078 B9D1Q9UPM9 204 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 PCDHGB1Q9Y5G3 927 aa27.19■■□□□ 1.94
CTCF-203ENST00000566078 AKAP8O43823 692 aaKnown RBP27.18■■□□□ 1.94
CTCF-203ENST00000566078 AHCYL1O43865 530 aa27.18■■□□□ 1.94
CTCF-203ENST00000566078 DCKP27707 260 aa27.18■■□□□ 1.94
CTCF-203ENST00000566078 RPL5P46777 297 aaKnown RBP27.18■■□□□ 1.94
CTCF-203ENST00000566078 POU4F2Q12837 409 aa27.18■■□□□ 1.94
CTCF-203ENST00000566078 IRF3Q14653 427 aa27.18■■□□□ 1.94
CTCF-203ENST00000566078 MED12LQ86YW9 2145 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 CRABP1P29762 137 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 LYPD4Q6UWN0 246 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 ZNF775Q96BV0 537 aaPredicted RBP27.17■■□□□ 1.94
CTCF-203ENST00000566078 GPR137Q96N19 417 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 OR2M2Q96R28 347 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 CNN2Q99439 309 aaKnown RBP27.17■■□□□ 1.94
CTCF-203ENST00000566078 ACOT13Q9NPJ3 140 aa27.17■■□□□ 1.94
CTCF-203ENST00000566078 IGLV1-36A0A0B4J1U3 117 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 AQP8O94778 261 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 SBK2P0C263 348 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 TBCEQ15813 527 aaPredicted RBP27.16■■□□□ 1.94
CTCF-203ENST00000566078 DNM1P34Q6PK57 102 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 POMGNT2Q8NAT1 580 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 ING1Q9UK53 422 aaPredicted RBP27.16■■□□□ 1.94
CTCF-203ENST00000566078 ARHGAP21Q5T5U3 1957 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 J3QRE1 110 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 MYL12AP19105 171 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 NAA10P41227 235 aaPredicted RBP27.16■■□□□ 1.94
CTCF-203ENST00000566078 FAR1Q8WVX9 515 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 RBP7Q96R05 134 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 RACGAP1Q9H0H5 632 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 KLHL9Q9P2J3 617 aa27.16■■□□□ 1.94
CTCF-203ENST00000566078 IGHA1P01876 353 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 ALDH3B2P48448 385 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 CENPAP49450 140 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 SELENOPP49908 381 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 ETFDHQ16134 617 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 ZNF511Q8NB15 262 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 CLEC2DQ9UHP7 191 aa27.15■■□□□ 1.94
CTCF-203ENST00000566078 EXOSC1Q9Y3B2 195 aaKnown RBP27.15■■□□□ 1.94
CTCF-203ENST00000566078 IGKV3D-15A0A087WSY6 115 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 SELENOFO60613 162 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 GPANK1O95872 356 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 ETV1P50549 477 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 THEM4Q5T1C6 240 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 TMEM123Q8N131 208 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 OR10H4Q8NGA5 316 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 OR5M9Q8NGP3 310 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 FOXN4Q96NZ1 517 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 TBX5Q99593 518 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 BATF3Q9NR55 127 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 ZMIZ1Q9ULJ6 1067 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 RCE1Q9Y256 329 aa27.14■■□□□ 1.94
CTCF-203ENST00000566078 IGKV1D-43A0A0B4J1Z2 117 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 OR14I1A6ND48 311 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 TVP23AA6NH52 213 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 SLC22A20A6NK97 555 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 CENPBD1B2RD01 187 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 ZNF432O94892 652 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 PTHP01270 115 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 JUNBP17275 347 aaPredicted RBP27.13■■□□□ 1.93
CTCF-203ENST00000566078 CSNK1A1P48729 337 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 RNLSQ5VYX0 342 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 SMAP2Q8WU79 429 aaPredicted RBP27.13■■□□□ 1.93
CTCF-203ENST00000566078 NMD3Q96D46 503 aaKnown RBP27.13■■□□□ 1.93
CTCF-203ENST00000566078 EMC3Q9P0I2 261 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 ERGIC3Q9Y282 383 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 COA3Q9Y2R0 106 aaPredicted RBP27.13■■□□□ 1.93
CTCF-203ENST00000566078 ZNF175Q9Y473 711 aa27.13■■□□□ 1.93
CTCF-203ENST00000566078 PHF3Q92576 2039 aaKnown RBP27.13■■□□□ 1.93
CTCF-203ENST00000566078 C12orf71A8MTZ7 269 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 KHDRBS3O75525 346 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 TFP02787 698 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 LCKP06239 509 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 RNPS1Q15287 305 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 HIST3H3Q16695 136 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 ZNF324BQ6AW86 544 aaPredicted RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 AAED1Q7RTV5 226 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 SATL1Q86VE3 508 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 ERI1Q8IV48 349 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 CISD2Q8N5K1 135 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 TEX19Q8NA77 164 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 OR6N1Q8NGY5 312 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 FNDC8Q8TC99 324 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 NSMAFQ92636 917 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 MUL1Q969V5 352 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 JAM3Q9BX67 310 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 CHCHD3Q9NX63 227 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 DOCK7Q96N67 2140 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 TLN1Q9Y490 2541 aaKnown RBP27.12■■□□□ 1.93
CTCF-203ENST00000566078 DPPA5A6NC42 116 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 GPR171O14626 319 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 MYL12BO14950 172 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 HLA-DQA2P01906 255 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 FGD2Q7Z6J4 655 aa27.12■■□□□ 1.93
CTCF-203ENST00000566078 MCEMP1Q8IX19 187 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms