RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 BPESC1Q9GZL8 116 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 RAB1BQ9H0U4 201 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 TMEM38BQ9NVV0 291 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 GID8Q9NWU2 228 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 CMTM6Q9NX76 183 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 A4GNTQ9UNA3 340 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 CAPN7Q9Y6W3 813 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 VSTM5A8MXK1 200 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 PIP5K1CO60331 668 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 TRMUO75648 421 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 STAMBPO95630 424 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 RAB36O95755 333 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 BCL10O95999 233 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 IGF2P01344 180 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 SERPINA5P05154 406 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 ADRA2AP08913 450 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 OR8G3PP0DMU2 310 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 DAOP14920 347 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 GLRXP35754 106 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 MYBPC1Q00872 1141 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 FXNQ16595 210 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 CHRFAM7AQ494W8 412 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 CYB5R2Q6BCY4 276 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 LRP11Q86VZ4 500 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 SLC15A3Q8IY34 581 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 MICU2Q8IYU8 434 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 PAQR4Q8N4S7 273 aaPredicted RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 ARIH2OSQ8N7S6 290 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 NOXO1Q8NFA2 376 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 OR4K5Q8NGD3 323 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 LIPHQ8WWY8 451 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 MCHR2Q969V1 340 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 MRPL24Q96A35 216 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 MSI2Q96DH6 328 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 TPD52L3Q96J77 140 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 KCNK17Q96T54 332 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 SOX7Q9BT81 388 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 POLR2J2Q9GZM3 115 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 POLR2J3Q9H1A7 115 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 TPK1Q9H3S4 243 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 DENND2DQ9H6A0 471 aaPredicted RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 MYOZ1Q9NP98 299 aaPredicted RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 MYEF2Q9P2K5 600 aaKnown RBP9.32□□□□□ -0.92
VPS39-208ENST00000564994 CMAHPQ9Y471 501 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 SNX13Q9Y5W8 968 aa9.32□□□□□ -0.92
VPS39-208ENST00000564994 ELOVL7A1L3X0 281 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 LYNX1G3V0Z9 82 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 SLC22A2O15244 555 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 IFNA14P01570 189 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 IGHG1P01857 330 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 LYNX1P0DP58 116 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 THRBP10828 461 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 CCL2P13500 99 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 ACADSP16219 412 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 YAP1P46937 504 aaKnown RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 EVX1P49640 407 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 GZMKP49863 264 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 ZNF133P52736 654 aaPredicted RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 CLRN1P58418 232 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 SELENOWP63302 87 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 LAPTM4AQ15012 233 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 ARMC4Q5T2S8 1044 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 C8orf82Q6P1X6 216 aaPredicted RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 CXXC5Q7LFL8 322 aaKnown RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 VTCN1Q7Z7D3 282 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 SYT14Q8NB59 555 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 RP9Q8TA86 221 aaKnown RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 NEU4Q8WWR8 484 aaPredicted RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 HDAC2Q92769 488 aaKnown RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 NMD3Q96D46 503 aaKnown RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 PRRC1Q96M27 445 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 SYT3Q9BQG1 590 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 DYNLRB1Q9NP97 96 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 INIPQ9NRY2 104 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 MAN2C1Q9NTJ4 1040 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 TMEM160Q9NX00 188 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 FBXO9Q9UK97 447 aaPredicted RBP9.31□□□□□ -0.92
VPS39-208ENST00000564994 FZR1Q9UM11 496 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 MED31Q9Y3C7 131 aa9.31□□□□□ -0.92
VPS39-208ENST00000564994 IGKV1D-43A0A0B4J1Z2 117 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 A0A1W2PRG6 482 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 LRP5LA4QPB2 252 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 MCIDASD6RGH6 385 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 J3KTA2 159 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 NME4O00746 187 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 FFAR1O14842 300 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 LMX1BO60663 402 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 LILRA1O75019 489 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 SLC2A10O95528 541 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 MMP7P09237 267 aaPredicted RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 FAM157CP0CG43 387 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 COX4I1P13073 169 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 APEHP13798 732 aaKnown RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 ZNF23P17027 643 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 IGFBP5P24593 272 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 GIFP27352 417 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 IL2RGP31785 369 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 CDAP32320 146 aa9.3□□□□□ -0.92
VPS39-208ENST00000564994 MDH1P40925 334 aaKnown RBP9.3□□□□□ -0.92
VPS39-208ENST00000564994 ALDH3B1P43353 468 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms