RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MARCH7Q9H992 704 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 PATZ1Q9HBE1 687 aaKnown RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TCF7L1Q9HCS4 588 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 NPHS2Q9NP85 383 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF443Q9Y2A4 671 aaPredicted RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 RNF114Q9Y508 228 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 GPR45Q9Y5Y3 372 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 NPTNQ9Y639 398 aa6.18□□□□□ -1.42
VPS4A-203ENST00000564399 TET2Q6N021 2002 aaPredicted RBP6.18□□□□□ -1.42
VPS4A-203ENST00000564399 CMYA5Q8N3K9 4069 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 TRAV36DV7A0A075B6V5 113 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 A0A087WUJ7 227 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 IQCMA0A1B0GVH7 501 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CCDC154A6NI56 674 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SRRM5B3KS81 715 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 C3orf80F5H4A9 247 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 ERLIN1O75477 346 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 NDUFA7O95182 113 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 TGDSO95455 350 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 IGHV3-13P01766 116 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 PRB2P02812 416 aaPredicted RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SELEP16581 610 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CCNOP22674 350 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 AHCYP23526 432 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CD80P33681 288 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SLC6A9P48067 706 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CLNS1AP54105 237 aaKnown RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CRISP3P54108 245 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 KRTAP10-3P60369 221 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SEC61A1P61619 476 aaKnown RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 RELBQ01201 579 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 PAX8Q06710 450 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 HNRNPA0Q13151 305 aaKnown RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 PDCD1Q15116 288 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 DPY19L1Q2PZI1 675 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SMU1Q2TAY7 513 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 DEFB112Q30KQ8 113 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF718Q3SXZ3 478 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SPANXN4Q5MJ08 99 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 COX20Q5RI15 118 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SPATA46Q5T0L3 261 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 RNF220Q5VTB9 566 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 C5orf46Q6UWT4 87 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 BTNL3Q6UXE8 466 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 C9orf139Q6ZV77 190 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SLC22A24Q8N4F4 322 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 C10orf53Q8N6V4 93 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 ADPRHL1Q8NDY3 354 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 GEMIN6Q8WXD5 167 aaKnown RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 TESCQ96BS2 214 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CCDC115Q96NT0 180 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 SPATA9Q9BWV2 254 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 ASPNQ9BXN1 380 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 KRTAP3-3Q9BYR6 98 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 KRTAP3-2Q9BYR7 98 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 NANOGQ9H9S0 305 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 DCAF16Q9NXF7 216 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 ASIC5Q9NY37 505 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 C1RLQ9NZP8 487 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 CALML5Q9NZT1 146 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 P2RX2Q9UBL9 471 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 TRIM33Q9UPN9 1127 aa6.17□□□□□ -1.42
VPS4A-203ENST00000564399 POLR3KQ9Y2Y1 108 aaPredicted RBP6.17□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM247A6NEH6 219 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 ZSCAN5BA6NJL1 495 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 C11orf98E9PRG8 122 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 TM9SF1O15321 606 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 KRT75O95678 551 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 SNAP29O95721 258 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 PLATP00750 562 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 IGHV2-70P01814 119 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 BCHEP06276 602 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 MYZAPP0CAP1 466 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 APLNRP35414 380 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 CRATP43155 626 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 BIDP55957 195 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 HSF2Q03933 536 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 PUDPQ08623 228 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 SLC36A2Q495M3 483 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM155Q4W5P6 130 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 RPS26P11Q5JNZ5 115 aaPredicted RBP6.16□□□□□ -1.42
VPS4A-203ENST00000564399 THEM4Q5T1C6 240 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 FAM205BPQ63HN1 556 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 LRRN1Q6UXK5 716 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 BRD3OSQ6XYD6 125 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 Q6ZPA2 131 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 SLC16A14Q7RTX9 510 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 RBM15BQ8NDT2 890 aaKnown RBP6.16□□□□□ -1.42
VPS4A-203ENST00000564399 OR4K5Q8NGD3 323 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 OR10S1Q8NGN2 331 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 IPCEF1Q8WWN9 437 aaPredicted RBP6.16□□□□□ -1.42
VPS4A-203ENST00000564399 UPRTQ96BW1 309 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 EPYCQ99645 322 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 CHIAQ9BZP6 476 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 AKTIPQ9H8T0 292 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 TCF7L2Q9NQB0 619 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 CYSLTR2Q9NS75 346 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 SLC6A13Q9NSD5 602 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM106BQ9NUM4 274 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM38BQ9NVV0 291 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms