RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TXNIPQ9H3M7 391 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 NRIP3Q9NQ35 241 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 TAS2R5Q9NYW4 299 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 EMC3Q9P0I2 261 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 FOXD3Q9UJU5 478 aaPredicted RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.47□□□□□ -0.73
LDLR-212ENST00000560467 CAMK2AQ9UQM7 478 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 RPL36Q9Y3U8 105 aaKnown RBP10.47□□□□□ -0.73
LDLR-212ENST00000560467 TLN2Q9Y4G6 2542 aa10.47□□□□□ -0.73
LDLR-212ENST00000560467 CSPG4Q6UVK1 2322 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 A0A0J9YW62 118 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 LOC102725191A0A1B0GVB3 256 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 A0A1W2PNV4 684 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 MAGEA13PA6NCF6 341 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 AQP7P3A6NL99 342 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 AHRRA9YTQ3 701 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 GPR171O14626 319 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 SURF4O15260 269 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 AHCYL1O43865 530 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CXCL13O43927 109 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 FAM20BO75063 409 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 PLGP00747 810 aaPredicted RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 IL2RAP01589 272 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 RPSAP08865 295 aaKnown RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 CD53P19397 219 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 TIMP3P35625 211 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 ACVR1BP36896 505 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 GUCA1AP43080 201 aaPredicted RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 SLC16A1P53985 500 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CXCR4P61073 352 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 RPL27P61353 136 aaKnown RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 ISL1P61371 349 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CDK5R2Q13319 367 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 ITGADQ13349 1161 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 MAD2L1BPQ15013 274 aaPredicted RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 C6orf141Q5SZD1 244 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 NSUN5P2Q63ZY6 315 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 ACSM5Q6NUN0 579 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 DNM1P34Q6PK57 102 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 SLC35D2Q76EJ3 337 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 P4HA3Q7Z4N8 544 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 IGFN1Q86VF2 1251 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 TMEM99Q8N816 258 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 BPIFB6Q8NFQ5 453 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 OR52E2Q8NGJ4 325 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 OR8D4Q8NGM9 314 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 OR10D3Q8NH80 312 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 MOSPD2Q8NHP6 518 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 FNDC8Q8TC99 324 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 IPCEF1Q8WWN9 437 aaPredicted RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 MYDGFQ969H8 173 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 LRR1Q96L50 414 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 ADAD1Q96M93 576 aaKnown RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 RBP7Q96R05 134 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 TRIB1Q96RU8 372 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 FN3KQ9H479 309 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 VCX3AQ9NNX9 186 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CCNB1IP1Q9NPC3 277 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CMC2Q9NRP2 79 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 PARPBPQ9NWS1 579 aa10.46□□□□□ -0.73
LDLR-212ENST00000560467 CHCHD3Q9NX63 227 aaKnown RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 ZNF629Q9UEG4 869 aaPredicted RBP10.46□□□□□ -0.73
LDLR-212ENST00000560467 EFCAB10A6NFE3 127 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 NPIPB13A6NJU9 1138 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 NPIPB4C9JG80 1138 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 BHLHE40O14503 412 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 ARHGEF9O43307 516 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 HRGP04196 525 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 TP53P04637 393 aaPredicted RBP10.45□□□□□ -0.74
LDLR-212ENST00000560467 CCDC159P0C7I6 412 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 ZNF708P17019 499 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 CENPAP49450 140 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 LHX2P50458 406 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 BLVRAP53004 296 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 CLDN20P56880 219 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 RPS7P62081 194 aaKnown RBP10.45□□□□□ -0.74
LDLR-212ENST00000560467 POU3F1Q03052 451 aaPredicted RBP10.45□□□□□ -0.74
LDLR-212ENST00000560467 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.45□□□□□ -0.74
LDLR-212ENST00000560467 CD47Q08722 323 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 TMED1Q13445 227 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 PON3Q15166 354 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 RNPS1Q15287 305 aaKnown RBP10.45□□□□□ -0.74
LDLR-212ENST00000560467 ACKR1Q16570 336 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 OCLNQ16625 522 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 KLHL22Q53GT1 634 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 SLC25A30Q5SVS4 291 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 THSD4Q6ZMP0 1018 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 CXXC5Q7LFL8 322 aaKnown RBP10.45□□□□□ -0.74
LDLR-212ENST00000560467 PRIMA1Q86XR5 153 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 ENTHD1Q8IYW4 607 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 ARIH2OSQ8N7S6 290 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 OR4Q3Q8NH05 313 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 PRDM14Q9GZV8 571 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 KLHL9Q9P2J3 617 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 SNX5Q9Y5X3 404 aa10.45□□□□□ -0.74
LDLR-212ENST00000560467 TEX13CA0A0J9YWL9 993 aa10.44□□□□□ -0.74
LDLR-212ENST00000560467 MBD3L4A6NDZ8 208 aaPredicted RBP10.44□□□□□ -0.74
LDLR-212ENST00000560467 MBD3L3A6NE82 208 aaPredicted RBP10.44□□□□□ -0.74
LDLR-212ENST00000560467 MBD3L5A6NJ08 208 aaPredicted RBP10.44□□□□□ -0.74
LDLR-212ENST00000560467 CD8B2A6NJW9 211 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms