RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NOS3P29474 1203 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CCKARP32238 428 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CLRN1P58418 232 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 RAP1BP61224 184 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 RAP1AP62834 184 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.28□□□□□ -0.6
SHMT2-227ENST00000557269 NPRL3Q12980 569 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 ETFDHQ16134 617 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CEACAM16Q2WEN9 425 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 FAM205BPQ63HN1 556 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 SLC27A4Q6P1M0 643 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 STAC2Q6ZMT1 411 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 BEND4Q6ZU67 534 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 C22orf34Q6ZV56 151 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 GPR137CQ8N3F9 429 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF433Q8N7K0 673 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-227ENST00000557269 POMGNT2Q8NAT1 580 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 NPEPL1Q8NDH3 523 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 SDR9C7Q8NEX9 313 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 HTRA1Q92743 480 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 RNASE6Q93091 150 aaKnown RBP11.28□□□□□ -0.6
SHMT2-227ENST00000557269 MCHR2Q969V1 340 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 TSSK2Q96PF2 358 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 FN3KQ9H479 309 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 TOR3AQ9H497 397 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 SLC25A19Q9HC21 320 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CRLF2Q9HC73 371 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 VSX1Q9NZR4 365 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-227ENST00000557269 OR6C68A6NDL8 312 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 OR6C65A6NJZ3 312 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ZAR1LA6NP61 321 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 RPL36A-HNRNPH2H7BZ11 118 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 M0R129 80 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 DCTN6O00399 190 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SEC14L2O76054 403 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 CDH2P19022 906 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-227ENST00000557269 GRK5P34947 590 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 UGT2B10P36537 528 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 CD79BP40259 229 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF133P52736 654 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ESRRGP62508 458 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ARF1P84077 181 aaKnown RBP11.27□□□□□ -0.61
SHMT2-227ENST00000557269 CD47Q08722 323 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SFRP5Q5T4F7 317 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SLX4IPQ5VYV7 408 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 LEG1Q6P5S2 330 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SLC25A47Q6Q0C1 308 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 CYB561A3Q8NBI2 242 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SLC37A3Q8NCC5 494 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 NSMAFQ92636 917 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ALG12Q9BV10 488 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 HCAR1Q9BXC0 346 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ULBP2Q9BZM5 246 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 SYT4Q9H2B2 425 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 ELOVL5Q9NYP7 299 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 BAIAP2Q9UQB8 552 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 UGT2A1Q9Y4X1 527 aa11.27□□□□□ -0.61
SHMT2-227ENST00000557269 A1L4Q6 167 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 CENPBD1B2RD01 187 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF587BE7ETH6 402 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 XKRYO14609 159 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 SURF4O15260 269 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 DHHO43323 396 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 RAD51DO75771 328 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 CTLA4P16410 223 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 MPGP29372 298 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 ITGADQ13349 1161 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 CRMP1Q14194 572 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 P2RY6Q15077 328 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 GABRA6Q16445 453 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 THEM4Q5T1C6 240 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 OTPQ5XKR4 325 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 FBXW10Q5XX13 1052 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 C12orf73Q69YU5 71 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 HDDC2Q7Z4H3 204 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 ADCK1Q86TW2 530 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 JAZF1Q86VZ6 243 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 OR6V1Q8N148 313 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 ZNRF4Q8WWF5 429 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 FOXN4Q96NZ1 517 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 GRIP2Q9C0E4 1043 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 NUAK2Q9H093 628 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 NELFAQ9H3P2 528 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 MED20Q9H944 212 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 TAS2R16Q9NYV7 291 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 GPR52Q9Y2T5 361 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 HELZ2Q9BYK8 2649 aaKnown RBP11.26□□□□□ -0.61
SHMT2-227ENST00000557269 HCFC1P51610 2035 aa11.26□□□□□ -0.61
SHMT2-227ENST00000557269 A0A096LPE4 126 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 A0A1W2PPZ6 126 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 FAM183AA6NL82 134 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 FAM171A2A8MVW0 826 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 C16orf97H3BN30 126 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 PRKYO43930 277 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 SLC16A7O60669 478 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 GPANK1O95872 356 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 SCG5P05408 212 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 CLUP10909 449 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 PSMB1P20618 241 aaKnown RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 CDAP32320 146 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms