RNA–Protein interactions for RNA: ENST00000551516.1

CPSF6-207, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2 BASIC

Gene CPSF6, Length 234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-207ENST00000551516 NIPAL1Q6NVV3 410 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 TRIM40Q6P9F5 258 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 OPN5Q6U736 354 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 TMIGD1Q6UXZ0 262 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 NHLRC1Q6VVB1 395 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 C9orf139Q6ZV77 190 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RTN4RL2Q86UN3 420 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MMD2Q8IY49 270 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 ST13P4Q8IZP2 240 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 CENPLQ8N0S6 344 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 EID3Q8N140 333 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 ARIH2OSQ8N7S6 290 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 GPATCH11Q8N954 259 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 CCDC63Q8NA47 563 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 SPC24Q8NBT2 197 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MAPK1IP1LQ8NDC0 245 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 OR7G3Q8NG95 312 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RAB3IL1Q8TBN0 382 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 FAM110BQ8TC76 370 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MCOLN3Q8TDD5 553 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 PTP4A1Q93096 173 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RERGQ96A58 199 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 ESAMQ96AP7 390 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 CNRIP1Q96F85 164 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 VSTM2LQ96N03 204 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RILPQ96NA2 401 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 ZFP3Q96NJ6 502 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 BTBD9Q96Q07 612 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 PSD2Q9BQI7 771 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RSPO3Q9BXY4 272 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 REG4Q9BYZ8 158 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 SLC5A7Q9GZV3 580 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 LAT2Q9GZY6 243 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 NAT10Q9H0A0 1025 aaKnown RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RACGAP1Q9H0H5 632 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 RNF121Q9H920 327 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 A4GALTQ9NPC4 353 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 PRTFDC1Q9NRG1 225 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 SDR39U1Q9NRG7 319 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 PNO1Q9NRX1 252 aaKnown RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 HPF1Q9NWY4 346 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 TEX10Q9NXF1 929 aaPredicted RBP2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MAT2BQ9NZL9 334 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 BFARQ9NZS9 450 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 FLRT3Q9NZU0 649 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 STUB1Q9UNE7 303 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 OARD1Q9Y530 152 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 COL7A1Q02388 2944 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 FREM1Q5H8C1 2179 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MALRD1Q5VYJ5 2156 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 FREM3P0C091 2139 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 MED12LQ86YW9 2145 aa2.02□□□□□ -2.09
CPSF6-207ENST00000551516 CR1P17927 2039 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 YLPM1P49750 1951 aaKnown RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 C13orf42A0A1B0GVH6 325 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 USP27XA6NNY8 438 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 FOXE1O00358 373 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 OR7A17O14581 309 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TLX2O43763 284 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 PRAF2O60831 178 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 SS18L1O75177 396 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 CBR3O75828 277 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 KRT36O76013 467 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 ACTL6AO96019 429 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IFNB1P01574 187 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IGKV1D-16P01601 117 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 FGGP02679 453 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 APOHP02749 345 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 PRSS1P07477 247 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 SLC35G6P0C7Q6 338 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IGHV4-31P0DP07 118 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IGHV4-38-2P0DP08 117 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 LBPP18428 481 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 SHC1P29353 583 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 SRD5A2P31213 254 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TIA1P31483 386 aaKnown RBP eCLIP2.01□□□□□ -2.091e-9■■■■■ 39.6
CPSF6-207ENST00000551516 SFTPDP35247 375 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 ATP6V1E1P36543 226 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 CD79BP40259 229 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 FRKP42685 505 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 ERVFC1-1P60608 527 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IRX1P78414 480 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 ACTN3Q08043 901 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 LOXL1Q08397 574 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 RASGEF1BQ0VAM2 473 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TRAP1Q12931 704 aaKnown RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 SERTAD2Q14140 314 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 EFTUD2Q15029 972 aaKnown RBP eCLIP2.01□□□□□ -2.097e-7■■■■□ 20
CPSF6-207ENST00000551516 KIAA0040Q15053 153 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TMED2Q15363 201 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TRADDQ15628 312 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TSNQ15631 228 aaKnown RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 ZNF672Q499Z4 452 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 IQCCQ4KMZ1 466 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 PDLIM3Q53GG5 364 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 LBHQ53QV2 105 aaPredicted RBP2.01□□□□□ -2.09
CPSF6-207ENST00000551516 TECRLQ5HYJ1 363 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 C6orf52Q5T4I8 152 aa2.01□□□□□ -2.09
CPSF6-207ENST00000551516 LCN1P1Q5VSP4 162 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms