RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 RGS7BPQ6MZT1 257 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-218ENST00000548945 SHQ1Q6PI26 577 aaKnown RBP11.01□□□□□ -0.65
PTCH1-218ENST00000548945 USP43Q70EL4 1123 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 CARM1Q86X55 608 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF584Q8IVC4 421 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 SKA3Q8IX90 412 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 SLC22A24Q8N4F4 322 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 C10orf53Q8N6V4 93 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 HIPK4Q8NE63 616 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF418Q8TF45 676 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-218ENST00000548945 YIPF5Q969M3 257 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 RABEP2Q9H5N1 569 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 SLC52A3Q9NQ40 469 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 TCF7L2Q9NQB0 619 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 NKIRAS2Q9NYR9 191 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 SLAMF8Q9P0V8 285 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 DUSP13Q9UII6 198 aa11.01□□□□□ -0.65
PTCH1-218ENST00000548945 IGLV3-9A0A075B6K5 115 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 A0A1W2PPW3 197 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 LRRN3E7EW58 273 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 PPIHO43447 177 aaKnown RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 MGRN1O60291 552 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 NCR1O76036 304 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 OR6A2O95222 327 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 FARS2O95363 451 aaKnown RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 SNAP29O95721 258 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 NAT2P11245 290 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF250P15622 560 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 KLF3P57682 345 aaPredicted RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 PCBP3P57721 371 aaKnown RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 MYBPC1Q00872 1141 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 RUNX1T1Q06455 604 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 NKPD1Q17RQ9 610 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 PAGE3Q5JUK9 113 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 WDR88Q6ZMY6 472 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 SLC35D2Q76EJ3 337 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 PIGWQ7Z7B1 504 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 SLC30A7Q8NEW0 376 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF566Q969W8 418 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 ZMYND19Q96E35 227 aaPredicted RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 SLC25A44Q96H78 314 aaPredicted RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 LRRC37BQ96QE4 947 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 MCHR1Q99705 422 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 ELAC2Q9BQ52 826 aaKnown RBP11□□□□□ -0.65
PTCH1-218ENST00000548945 WFDC6Q9BQY6 131 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 TMEM38BQ9NVV0 291 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 SLCO1C1Q9NYB5 712 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 TREM2Q9NZC2 230 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 ANGPT4Q9Y264 503 aa11□□□□□ -0.65
PTCH1-218ENST00000548945 C17orf100A8MU93 164 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 C11orf98E9PRG8 122 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 WNT9BO14905 357 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 DHHO43323 396 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 SNX3O60493 162 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 SERPINI2O75830 405 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 PNPP00491 289 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 PTHP01270 115 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 AQP1P29972 269 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 TEKQ02763 1124 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 RBBP4Q09028 425 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF74Q16587 644 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 MOGQ16653 247 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 CGB2Q6NT52 195 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 ACSM5Q6NUN0 579 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 TMEM53Q6P2H8 277 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 TMEM154Q6P9G4 183 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 LRFN4Q6PJG9 635 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 C11orf65Q8NCR3 313 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 OR1J2Q8NGS2 313 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 FGFBP3Q8TAT2 258 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF519Q8TB69 540 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 SYNPRQ8TBG9 265 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 FAM216AQ8WUB2 273 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 ARHGDIGQ99819 225 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 SIKE1Q9BRV8 207 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 CCDC28BQ9BUN5 200 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 PLA2G12AQ9BZM1 189 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 SLC19A3Q9BZV2 496 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 IKZF5Q9H5V7 419 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 NARFLQ9H6Q4 476 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 HINT3Q9NQE9 182 aaKnown RBP10.99□□□□□ -0.65
PTCH1-218ENST00000548945 NANSQ9NR45 359 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 TAS2R5Q9NYW4 299 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 CCDC167Q9P0B6 97 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 TAAR3PQ9P1P4 343 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 ZNF229Q9UJW7 825 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 FZR1Q9UM11 496 aa10.99□□□□□ -0.65
PTCH1-218ENST00000548945 CENPBD1B2RD01 187 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 RNF13O43567 381 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 PATE4P0C8F1 98 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 PGA4P0DJD7 388 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 PGA3P0DJD8 388 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 CRYBB2P43320 205 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 RAD52P43351 418 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 IDH3AP50213 366 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 ATP4BP51164 291 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 HILS1P60008 231 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 SLC36A2Q495M3 483 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 CCDC197Q8NCU1 140 aa10.98□□□□□ -0.65
PTCH1-218ENST00000548945 SNX33Q8WV41 574 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms