RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 Q8N7P7 452 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 LINC01555Q8NAE3 123 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 CCDC148Q8NFR7 591 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 OR2G3Q8NGZ4 309 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 RHEBL1Q8TAI7 183 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 FAM81AQ8TBF8 368 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 ACMSDQ8TDX5 336 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 RNF138Q8WVD3 245 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 GEMIN6Q8WXD5 167 aaKnown RBP2.76□□□□□ -1.97
VPS29-205ENST00000548539 TMEM54Q969K7 222 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 GABARAPL3Q9BY60 117 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 ANAPC11Q9NYG5 84 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 PCYOX1Q9UHG3 505 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 NUFIP1Q9UHK0 495 aaKnown RBP2.76□□□□□ -1.97
VPS29-205ENST00000548539 KIAA1257Q9ULG3 409 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 A0A1B0GUA9 196 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 HIDE1A8MVS5 230 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 TRIM49D1C9J1S8 452 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 H3BNH8 94 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 AIM2O14862 343 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 SLC31A2O15432 143 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 H6PDO95479 791 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 TDGF1P13385 188 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 FOLR1P15328 257 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 CRISP2P16562 243 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 NAA10P41227 235 aaPredicted RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 RFX3P48380 749 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 CCR6P51684 374 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 CCR8P51685 355 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 TDGF1P3P51864 188 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 NCBP2P52298 156 aaKnown RBP eCLIP2.75□□□□□ -1.97
VPS29-205ENST00000548539 UGT2B15P54855 530 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 RPS15P62841 145 aaKnown RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 RPS21P63220 83 aaKnown RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 PPM1LQ5SGD2 360 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 PDIK1LQ8N165 341 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 LIX1Q8N485 282 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 RNF175Q8N4F7 328 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 OR7G2Q8NG99 324 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 OR10G9Q8NGN4 311 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 ZNF502Q8TBZ5 544 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 MCOLN3Q8TDD5 553 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 PIBF1Q8WXW3 757 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 SLC38A4Q969I6 547 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 RNF185Q96GF1 192 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 ZNF578Q96N58 590 aaPredicted RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 CHP1Q99653 195 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 ANP32EQ9BTT0 268 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 C20orf24Q9BUV8 137 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 OSBPL10Q9BXB5 764 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 DNTTIP1Q9H147 329 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 OR51M1Q9H341 326 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 RPF2Q9H7B2 306 aaKnown RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 TMEM185BQ9H7F4 350 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 NYAP2Q9P242 653 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 RABL2AQ9UBK7 228 aaPredicted RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 GNPTGQ9UJJ9 305 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 VANGL2Q9ULK5 521 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 ING4Q9UNL4 249 aa2.75□□□□□ -1.97
VPS29-205ENST00000548539 F11RQ9Y624 299 aaKnown RBP2.75□□□□□ -1.97
VPS29-205ENST00000548539 WI2-2373I1.2A0A1W2PRP0 233 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CDC7O00311 574 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CDH16O75309 829 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 SUPT3HO75486 399 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 EEDO75530 441 aaKnown RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 KRT14P02533 472 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CALM1P0DP23 149 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CALM2P0DP24 149 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CALM3P0DP25 149 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ZNF30P17039 623 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 SERPINB5P36952 375 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ATP5OP48047 213 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 LHX2P50458 406 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 NUTF2P61970 127 aaKnown RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 SMARCB1Q12824 385 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ZSCAN26Q16670 478 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 KCTD19Q17RG1 926 aaPredicted RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 SPANXN2Q5MJ10 180 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 VAX1Q5SQQ9 334 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ZNF429Q86V71 674 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ZNF433Q8N7K0 673 aaPredicted RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 ARIH2OSQ8N7S6 290 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 FBXL13Q8NEE6 735 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 IL22RA2Q969J5 263 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 LRRC58Q96CX6 371 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 AURKBQ96GD4 344 aaPredicted RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 PKNOX2Q96KN3 472 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 OR5B12Q96R08 314 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 KCNJ16Q9NPI9 418 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 ZNF331Q9NQX6 463 aaPredicted RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 CTPS2Q9NRF8 586 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 SAMSN1Q9NSI8 373 aaKnown RBP2.74□□□□□ -1.97
VPS29-205ENST00000548539 GCNT4Q9P109 453 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 CEMIPQ8WUJ3 1361 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 USP47Q96K76 1375 aa2.74□□□□□ -1.97
VPS29-205ENST00000548539 MEGF6O75095 1541 aa2.73□□□□□ -1.97
VPS29-205ENST00000548539 MAP3K15Q6ZN16 1313 aa2.73□□□□□ -1.97
VPS29-205ENST00000548539 ZNF816-ZNF321PA0A0X1KG74 233 aa2.73□□□□□ -1.97
VPS29-205ENST00000548539 SERTM2A0A1B0GWG4 89 aa2.73□□□□□ -1.97
VPS29-205ENST00000548539 PRSS37A4D1T9 235 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms