RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 VSTM2BA6NLU5 285 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 MS4A18H0YCH9 400 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ITGA10O75578 1167 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ALOX5APP20292 161 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 AGFG1P52594 562 aaKnown RBP9.96□□□□□ -0.81
CUX1-212ENST00000547394 TLE3Q04726 772 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 MFGE8Q08431 387 aaPredicted RBP9.96□□□□□ -0.81
CUX1-212ENST00000547394 MS4A18Q3C1V0 323 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 SLC35D3Q5M8T2 416 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 C1QTNF12Q5T7M4 302 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 YOD1Q5VVQ6 348 aaPredicted RBP9.96□□□□□ -0.81
CUX1-212ENST00000547394 RAB43Q86YS6 212 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ZNF676Q8N7Q3 588 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 OR5AK2Q8NH90 309 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 SLC22A4Q9H015 551 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 AUNIPQ9H7T9 357 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 MYEF2Q9P2K5 600 aaKnown RBP9.96□□□□□ -0.81
CUX1-212ENST00000547394 PCDHGB2Q9Y5G2 931 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 CPAMD8Q8IZJ3 1885 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 TRABD2BA6NFA1 517 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ZNF879B4DU55 563 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ZFAND5O76080 213 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ABHD16AO95870 558 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 PNLIPP16233 465 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 HTR3AP46098 478 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 SLC25A1P53007 311 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 C17orf67Q0P5P2 114 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 KCNJ8Q15842 424 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 DMRTC1Q5HYR2 192 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 AGAP6Q5VW22 663 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 UBQLNLQ8IYU4 475 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ZNF775Q96BV0 537 aaPredicted RBP9.96□□□□□ -0.81
CUX1-212ENST00000547394 UPRTQ96BW1 309 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 AGAP4Q96P64 663 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 GNRHR2Q96P88 292 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 ZNF281Q9Y2X9 895 aa9.96□□□□□ -0.81
CUX1-212ENST00000547394 MAP1BP46821 2468 aaKnown RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 SLC22A23A1A5C7 686 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 FTCDNL1E5RQL4 147 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 LYRM1O43325 122 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 TRIM3O75382 744 aaPredicted RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 UCHL1P09936 223 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 TMIGD3P0DMS9 266 aaPredicted RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 ADRA2CP18825 462 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 TALDO1P37837 337 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 PTGDSP41222 190 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 MAP2K3P46734 347 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 CD83Q01151 205 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 PUDPQ08623 228 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 ASAH1Q13510 395 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 CCDC92Q53HC0 331 aaPredicted RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 ZNF468Q5VIY5 522 aaPredicted RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 MRPL14Q6P1L8 145 aaKnown RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 FCRLAQ7L513 359 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 SLC7A5P1Q8MH63 180 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 OR2G2Q8NGZ5 317 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 ZNF519Q8TB69 540 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 RHBDD1Q8TEB9 315 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 FYTTD1Q96QD9 318 aaKnown RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 OR5B2Q96R09 309 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 THAP7Q9BT49 309 aaPredicted RBP9.96□□□□□ -0.82
CUX1-212ENST00000547394 BEX1Q9HBH7 125 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 ZNF160Q9HCG1 818 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 CYSLTR2Q9NS75 346 aa9.96□□□□□ -0.82
CUX1-212ENST00000547394 DSPP15924 2871 aaKnown RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 TRAV6A0A075B6T7 132 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 IGHV3-15A0A0B4J1V0 119 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 FAM240BA0A1B0GVZ2 78 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 DXOO77932 396 aaKnown RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 TXNDC12O95881 172 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 KIR3DL2P43630 455 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 SIGLEC14Q08ET2 396 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 MYBPHQ13203 477 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 CAMK2DQ13557 499 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 ALKBH1Q13686 389 aaKnown RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 WDR38Q5JTN6 314 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 LYPD8Q6UX82 237 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 AGBL5Q8NDL9 886 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 POC1BQ8TC44 478 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 CHAC2Q8WUX2 184 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 TMEM106AQ96A25 262 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 KLHL15Q96M94 604 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 TXNIPQ9H3M7 391 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 DDX28Q9NUL7 540 aaKnown RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 GPN3Q9UHW5 284 aaPredicted RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 CCDC163A0A0D9SF12 145 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 ANKUB1A6NFN9 424 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 NOTOA8MTQ0 251 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 NPIPA5E9PKD4 350 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 KLF7O75840 302 aaPredicted RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 KLK3P07288 261 aaPredicted RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 CDAP32320 146 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 RCVRNP35243 200 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 DDOSTP39656 456 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 PITPNBP48739 271 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 ZNF41P51814 821 aaPredicted RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 EIF2B1Q14232 305 aaKnown RBP9.95□□□□□ -0.82
CUX1-212ENST00000547394 PCOLCEQ15113 449 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 TBRG1Q3YBR2 411 aa9.95□□□□□ -0.82
CUX1-212ENST00000547394 FAM198BQ6UWH4 519 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms