RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 CD99L2Q8TCZ2 262 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 MSI2Q96DH6 328 aaKnown RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 DTD2Q96FN9 168 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 JSRP1Q96MG2 331 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 MRPS17Q9Y2R5 130 aaKnown RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 GON4LQ3T8J9 2241 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 TAPBPO15533 448 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 SLCO2B1O94956 709 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 MMP7P09237 267 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 INHBBP09529 407 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 SBK3P0C264 359 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 PCK2Q16822 640 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 PDLIM3Q53GG5 364 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 PRSS58Q8IYP2 241 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 ZDHHC22Q8N966 263 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 ANKRD9Q96BM1 317 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 REV1Q9UBZ9 1251 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 KCNG2Q9UJ96 466 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 PPT2Q9UMR5 302 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 A0A087WUU8 490 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 XRCC3O43542 346 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 EPXP11678 715 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 CSF2RBP32927 897 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 KCNJ3P48549 501 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 DVL1P1P54792 670 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 FCRLBQ6BAA4 426 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 RPUSD3Q6P087 351 aaKnown RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 CAMKMTQ7Z624 323 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 DTWD2Q8NBA8 298 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 TMEM229BQ8NBD8 167 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 IGSF21Q96ID5 467 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 FAM71F1Q96KD3 344 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-212ENST00000546744 CABLES2Q9BTV7 478 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 BCO1Q9HAY6 547 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 GNG13Q9P2W3 67 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 OR52A1Q9UKL2 312 aa11.8□□□□□ -0.52
PTCH1-212ENST00000546744 RNASEK-C17orf49H0YIS7 233 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 AP4M1O00189 453 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 NSA2O95478 260 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 PLGP00747 810 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 EIF4EP06730 217 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HMGA2P52926 109 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 REEP5Q00765 189 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 COX20Q5RI15 118 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MORN1Q5T089 497 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 OR7E24Q6IFN5 339 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TMEM88Q6PEY1 159 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TMEM179BQ7Z7N9 219 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 ZNF280BQ86YH2 543 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HSD17B11Q8NBQ5 300 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 PTP4A1Q93096 173 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 AMDHD1Q96NU7 426 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 STACQ99469 402 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 SELENOIQ9C0D9 397 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MOB1AQ9H8S9 216 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MRPS28Q9Y2Q9 187 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 PRSS21Q9Y6M0 314 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 CCDC85CA6NKD9 419 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 CTDSPLO15194 276 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HNRNPA1P09651 372 aaKnown RBP eCLIP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 BRCA1P38398 1863 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 ZNF628Q5EBL2 1059 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 EXOSC6Q5RKV6 272 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 AGBL4Q5VU57 503 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MISPQ8IVT2 679 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 GPR137CQ8N3F9 429 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 ARRDC1Q8N5I2 433 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 WDR77Q9BQA1 342 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HINT3Q9NQE9 182 aaKnown RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 LHX3Q9UBR4 397 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 DNAJB11Q9UBS4 358 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MEIS3P2A8K0S8 358 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 ZNF724A8MTY0 619 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HLA-DOBP13765 273 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 SDHAP31040 664 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 DIO1P49895 249 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 OR2B8PP59922 312 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 AFMIDQ63HM1 303 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 SLC35D2Q76EJ3 337 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 PTOV1Q86YD1 416 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 CMTM4Q8IZR5 234 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 FAM58AQ8N1B3 248 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 RCBTB1Q8NDN9 531 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TSLPQ969D9 159 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TVP23CQ96ET8 276 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 DCBLD2Q96PD2 775 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 KDM4EB2RXH2 506 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-212ENST00000546744 F6UZH7 168 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 K7ERQ8 282 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 SLC6A12P48065 614 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 SLC6A11P48066 632 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 HYAL2Q12891 473 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 IL10RAQ13651 578 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 MLC1Q15049 377 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 EOGTQ5NDL2 527 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 ACSM5Q6NUN0 579 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TCTN3Q6NUS6 607 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 CNKSR3Q6P9H4 555 aa11.79□□□□□ -0.52
PTCH1-212ENST00000546744 TTLL10Q6ZVT0 673 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms