RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MNTQ99583 582 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ZCCHC4Q9H5U6 513 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 FBXL21Q9UKT6 434 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 POMT2Q9UKY4 750 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 FARSAQ9Y285 508 aaKnown RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 SLC16A7O60669 478 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 IFNA7P01567 189 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 IL11P20809 199 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 EIF1AXP47813 144 aaKnown RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 POU3F4P49335 361 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 NR0B1P51843 470 aaKnown RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 KLHL26Q53HC5 615 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 TMEM184AQ6ZMB5 413 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ZNF615Q8N8J6 731 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 DMRTA2Q96SC8 542 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 LRRC61Q9BV99 259 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 PTDSS2Q9BVG9 487 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 SLITRK2Q9H156 845 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ZNF230Q9UIE0 474 aaPredicted RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 B9D1Q9UPM9 204 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 CD1CP29017 333 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 EFNA3P52797 238 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 LBX1P52954 281 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 GGTLC2Q14390 218 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ATXN7L3Q14CW9 347 aaPredicted RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 COL28A1Q2UY09 1125 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 LIN54Q6MZP7 749 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 TMEM65Q6PI78 240 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ATG4DQ86TL0 474 aaPredicted RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 ZSCAN1Q8NBB4 408 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 OR51A2Q8NGJ7 313 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 LMX1AQ8TE12 382 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ATG5Q9H1Y0 275 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 FBXO4Q9UKT5 387 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 MRPS33Q9Y291 106 aaKnown RBP13.62□□□□□ -0.23
USP28-214ENST00000545540 ANKRD20A5PA0PJZ0 165 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 HIST1H2ABP04908 130 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 HLA-DOBP13765 273 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 SDHAP31040 664 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 C4orf46Q504U0 113 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 ZNF684Q5T5D7 378 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 CORO6Q6QEF8 472 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 HIST3H2AQ7L7L0 130 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 LRRTM1Q86UE6 522 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 LINC00346Q8IVM7 164 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 RELL2Q8NC24 303 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 DUSP19Q8WTR2 217 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 HIST1H2ACQ93077 130 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 HAVCR1Q96D42 359 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 ARL6Q9H0F7 186 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 FBXL2Q9UKC9 423 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 FBXL3Q9UKT7 428 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 OR4C45A6NMZ5 311 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 EFCAB7A8K855 629 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 PDCD5O14737 125 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 ARPC3O15145 178 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 GSTZ1O43708 216 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 CREBL2O60519 120 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 SPDEFO95238 335 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 KIR3DL2P43630 455 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 PRPS1P60891 318 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 SPOCK1Q08629 439 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 BIKQ13323 160 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 NKPD1Q17RQ9 610 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 ARHGAP40Q5TG30 622 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 GLDNQ6ZMI3 551 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 SLC16A9Q7RTY1 509 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 FAM219AQ8IW50 185 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 MUC20Q8N307 709 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 GALNT11Q8NCW6 608 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 PTPMT1Q8WUK0 201 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 LINC00052Q96N35 136 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 SLC38A3Q99624 504 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 PRDM9Q9NQV7 894 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 CDV3Q9UKY7 258 aaKnown RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 SPTY2D1-AS1A0A0U1RR47 76 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 LOC101059948A0A1B0GTJ6 334 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 SHISA8B8ZZ34 492 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 ZNF264O43296 627 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 RBBP9O75884 186 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 RPS4XP62701 263 aaKnown RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 ZNF117Q03924 483 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 MFGE8Q08431 387 aaPredicted RBP13.61□□□□□ -0.23
USP28-214ENST00000545540 METTL11BQ5VVY1 283 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 WBP2NLQ6ICG8 309 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 RTN4RL2Q86UN3 420 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 TNFAIP8L1Q8WVP5 186 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 MAB21L2Q9Y586 359 aa13.61□□□□□ -0.23
USP28-214ENST00000545540 LOC105371267A0A1B0GV96 52 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 FITM1A5D6W6 292 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 TNFRSF10CO14798 259 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 GPRIN2O60269 458 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 PPM1BO75688 479 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 FNTBP49356 437 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 MAP2K6P52564 334 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 SKP2Q13309 424 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 BTN1A1Q13410 526 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 C2orf76Q3KRA6 126 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 HGDQ93099 445 aa13.6□□□□□ -0.23
USP28-214ENST00000545540 FAM46BQ96A09 425 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms