RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	CARF	Q8N187	725 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	D2HGDH	Q8N465	521 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	SAMD12	Q8N8I0	201 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	RCBTB1	Q8NDN9	531 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	OR4C3	Q8NH37	302 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	ZNF524	Q96C55	264 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	KCTD12	Q96CX2	325 aa	Known RBP	13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	LRRC46	Q96FV0	321 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	C7orf50	Q9BRJ6	194 aa	Known RBP	13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	EVA1A	Q9H8M9	152 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	SEMA5B	Q9P283	1151 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	CTSF	Q9UBX1	484 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268		A0A087WV62	115 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	FITM1	A5D6W6	292 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	MCRIP1	C9JLW8	97 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	MCIDAS	D6RGH6	385 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	NSA2	O95478	260 aa	Known RBP	13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	PNLIP	P16233	465 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	CD53	P19397	219 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	DRD5	P21918	477 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	GAL	P22466	123 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	CAPZA2	P47755	286 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	TSC22D1	Q15714	1073 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	PRAMEF17	Q5VTA0	474 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	NSMAF	Q92636	917 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	MMAB	Q96EY8	250 aa	Predicted RBP	13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	SLC41A2	Q96JW4	573 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	PGLYRP3	Q96LB9	341 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	MNT	Q99583	582 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	TMPRSS13	Q9BYE2	586 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	DNTTIP1	Q9H147	329 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	EDAR	Q9UNE0	448 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268	SLC6A5	Q9Y345	797 aa		13.63	□□□□□ -0.23
CHFR-223	ENST00000544268		A0A1W2PQM1	296 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	CER1	O95813	267 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	HLX	Q14774	488 aa	Predicted RBP	13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	ZSWIM7	Q19AV6	140 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	SFRP5	Q5T4F7	317 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	TCEAL6	Q6IPX3	200 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	OR1S1	Q8NH92	325 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	ABHD4	Q8TB40	342 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	TCEAL3	Q969E4	200 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	LCOR	Q96JN0	433 aa	Predicted RBP	13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	STAC	Q99469	402 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	GAL3ST1	Q99999	423 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	TMEM27	Q9HBJ8	222 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	BIN3	Q9NQY0	253 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268		A0A0G2JK05	382 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	FAM86C2P	A6NEL3	165 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	NKX2-2	O95096	273 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	RNH1	P13489	461 aa	Known RBP	13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	PSMB10	P40306	273 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	MTNR1B	P49286	362 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	RAB13	P51153	203 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	SKP1	P63208	163 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	CCL7	P80098	99 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	OTP	Q5XKR4	325 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	SLITRK4	Q8IW52	837 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	OR1L3	Q8NH93	324 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	GHSR	Q92847	366 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	KRCC1	Q9NPI7	259 aa	Predicted RBP	13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	TRIM36	Q9NQ86	728 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	RPS6KB2	Q9UBS0	482 aa		13.62	□□□□□ -0.23
CHFR-223	ENST00000544268	RIIAD1	A6NNX1	92 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	PRAF2	O60831	178 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	KDM4B	O94953	1096 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	RCBTB2	O95199	551 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	HPGD	P15428	266 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	DEFA5	Q01523	94 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	C21orf62-AS1	Q17RA5	79 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	SLC22A10	Q63ZE4	541 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	TMEM71	Q6P5X7	295 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	CDK20	Q8IZL9	346 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	RNF113B	Q8IZP6	322 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	ZNF321P	Q8N8H1	164 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	SVIP	Q8NHG7	77 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	PDCD1LG2	Q9BQ51	273 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	NKX6-2	Q9C056	277 aa	Predicted RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	ZNF768	Q9H5H4	540 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	SLC35A3	Q9Y2D2	325 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	CLDN16	Q9Y5I7	305 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	IER3IP1	Q9Y5U9	82 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	CACNA1C	Q13936	2221 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	ASCC3	Q8N3C0	2202 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	RP2	O75695	350 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	S100A11	P31949	105 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	SFXN4	Q6P4A7	337 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	TTLL10	Q6ZVT0	673 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	FAM98A	Q8NCA5	519 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	RASD2	Q96D21	266 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	NMNAT3	Q96T66	252 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	NDC1	Q9BTX1	674 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	CHIA	Q9BZP6	476 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	ARRDC1-AS1	Q9H2J1	176 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	CUTC	Q9NTM9	273 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	PIPOX	Q9P0Z9	390 aa		13.61	□□□□□ -0.23
CHFR-223	ENST00000544268	TEX46	H3BTG2	121 aa		13.6	□□□□□ -0.23
CHFR-223	ENST00000544268	OIP5	O43482	229 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms