RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 NPDC1Q9NQX5 325 aaPredicted RBP12.75□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GPR52Q9Y2T5 361 aa12.75□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PRSS37A4D1T9 235 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RPL36A-HNRNPH2H7BZ11 118 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ALPLP05186 524 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 HIST1H1CP16403 213 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PSMB1P20618 241 aaKnown RBP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ALDH3A2P51648 485 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 CRISP1P54107 249 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ESRRGP62508 458 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 FMODQ06828 376 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GINS1Q14691 196 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 HIST3H3Q16695 136 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 THEM4Q5T1C6 240 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 LEG1Q6P5S2 330 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 LNX2Q8N448 690 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZNF433Q8N7K0 673 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 STEAP2Q8NFT2 490 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 OR52E2Q8NGJ4 325 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZNF837Q96EG3 531 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 USE1Q9NZ43 259 aa12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 TMEFF2Q9UIK5 374 aaPredicted RBP12.74□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SLC22A23A1A5C7 686 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 AHCYL1O43865 530 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SLC2A10O95528 541 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RENP00797 406 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PEX19P40855 299 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 CDKN2AP42771 156 aaKnown RBP12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GIPRP48546 466 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZNF84P51523 738 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RAD23AP54725 363 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SH3BGRP55822 239 aaPredicted RBP12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SORDQ00796 357 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PTGES3Q15185 160 aaKnown RBP12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 STK11Q15831 433 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PGGHGQ32M88 737 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 TMEM236Q5W0B7 351 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 LPCAT4Q643R3 524 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 OR7E24Q6IFN5 339 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 LRFN4Q6PJG9 635 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PTCHD4Q6ZW05 846 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SDR9C7Q8NEX9 313 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 NSMAFQ92636 917 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 S100PBPQ96BU1 408 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 NMNAT3Q96T66 252 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ACTR6Q9GZN1 396 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SYT4Q9H2B2 425 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RIBC2Q9H4K1 309 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RERGLQ9H628 205 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RNPEPL1Q9HAU8 725 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 NKX1-2Q9UD57 310 aaPredicted RBP12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 NDRG3Q9UGV2 375 aa12.73□□□□□ -0.37
TNFRSF1A-216ENST00000543995 TUBAL3A6NHL2 446 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RIIAD1A6NNX1 92 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZNF99A8MXY4 864 aaPredicted RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 DHHO43323 396 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SEC14L2O76054 403 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 IFNGP01579 166 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PEX2P28328 305 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 HOXC12P31275 282 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 CCKARP32238 428 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GRK5P34947 590 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PCYT1AP49585 367 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ARF1P84077 181 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 CDK5Q00535 292 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SLC34A1Q06495 639 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 OR1K1Q8NGR3 316 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZC3HAV1LQ96H79 300 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SLC29A1Q99808 456 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 KLHL21Q9UJP4 597 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SPTBN1Q01082 2364 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 MGRN1O60291 552 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZNF3P17036 446 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 NPRL3Q12980 569 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GABRA6Q16445 453 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ZIK1Q3SY52 487 aaPredicted RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ALKBH2Q6NS38 261 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 ACSM5Q6NUN0 579 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 MEX3BQ6ZN04 569 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 GALNT4Q8N4A0 578 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 C1orf162Q8NEQ5 155 aaPredicted RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 LINC01560Q8TB33 94 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PLEKHA8Q96JA3 519 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 PSMG3-AS1Q96PY0 264 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SNX18Q96RF0 628 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 FOXB1Q99853 325 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 MED18Q9BUE0 208 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 SLC25A19Q9HC21 320 aa12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 RPRD1BQ9NQG5 326 aaKnown RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 VSX1Q9NZR4 365 aaPredicted RBP12.72□□□□□ -0.37
TNFRSF1A-216ENST00000543995 A0A096LPE4 126 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 IGKV1D-43A0A0B4J1Z2 117 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 A0A1W2PPL8 197 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 A0A1W2PPZ6 126 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 SLC16A7O60669 478 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 HMGN1P05114 100 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 B4GALT1P15291 398 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 PPP3CBP16298 524 aa12.71□□□□□ -0.38
TNFRSF1A-216ENST00000543995 EPHA2P29317 976 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms