RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GLTPQ9NZD2 209 aa13.18□□□□□ -0.3
CLSTN3-213ENST00000541953 CPSF4LA6NMK7 179 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 KPNA4O00629 521 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 PLPP2O43688 288 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MFN2O95140 757 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 PGA4P0DJD7 388 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 PGA3P0DJD8 388 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF250P15622 560 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MRPL19P49406 292 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MAGOHP61326 146 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MRPS11P82912 194 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MYBPC1Q00872 1141 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF74Q16587 644 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 DUSP7Q16829 419 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 SPRNQ5BIV9 151 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 UGT2A3Q6UWM9 527 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 OR4K5Q8NGD3 323 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 OR6T1Q8NGN1 323 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF347Q96SE7 839 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 MCHR1Q99705 422 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 TMEM38AQ9H6F2 299 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 HINT3Q9NQE9 182 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 CCDC167Q9P0B6 97 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 RAB21Q9UL25 225 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 PCDHB10Q9UN67 800 aa13.17□□□□□ -0.3
CLSTN3-213ENST00000541953 TANC2Q9HCD6 1990 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 PRKDCP78527 4128 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 TRAV20A0A0B4J274 112 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 MPZL1O95297 269 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 CH25HO95992 272 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 GPX2P18283 190 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 PCBP3P57721 371 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 DLEU7Q6UYE1 221 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 PIWIL3Q7Z3Z3 882 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 KRT73Q86Y46 540 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 ARMC8Q8IUR7 673 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 ZDHHC22Q8N966 263 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 OR6X1Q8NH79 312 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF418Q8TF45 676 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 FAM216AQ8WUB2 273 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 C22orf15Q8WYQ4 148 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 TLCD1Q96CP7 247 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF416Q9BWM5 594 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 SLCO1B3Q9NPD5 702 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 TCF7L2Q9NQB0 619 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 OPN4Q9UHM6 478 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 WIPI2Q9Y4P8 454 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 GMEB1Q9Y692 573 aa13.16□□□□□ -0.3
CLSTN3-213ENST00000541953 IGKV1D-43A0A0B4J1Z2 117 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 DHHO43323 396 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 CHP2O43745 196 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 IGHV2-5P01817 119 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 LCKP06239 509 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 MMP7P09237 267 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 QDPRP09417 244 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 OR8G3PP0DMU2 310 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 MAKP20794 623 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 IDH3AP50213 366 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 KLF3P57682 345 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 RBBP4Q09028 425 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 TSTQ16762 297 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 ENTPD8Q5MY95 495 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 SWT1Q5T5J6 900 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 USP51Q70EK9 711 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 C1QL2Q7Z5L3 287 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 ICA1LQ8NDH6 482 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 CPEB3Q8NE35 698 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 VANGL1Q8TAA9 524 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 SYNPRQ8TBG9 265 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 GCDHQ92947 438 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 SPATA5L1Q9BVQ7 753 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 C1QTNF5Q9BXJ0 243 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 DENND2DQ9H6A0 471 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 DCAF16Q9NXF7 216 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 SELENONQ9NZV5 590 aa13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 ZNF346Q9UL40 294 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-213ENST00000541953 RNF13O43567 381 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 MT-ATP6P00846 226 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 FSHBP01225 129 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 CD247P20963 164 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC6A2P23975 617 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 MPV17P39210 176 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 WNT5AP41221 380 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 CRYBB2P43320 205 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 CRYBA2P53672 197 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 ZP4Q12836 540 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 AWAT1Q58HT5 328 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 SPATA46Q5T0L3 261 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF613Q6PF04 617 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 USP43Q70EL4 1123 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 RANBP3LQ86VV4 465 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF101Q8IZC7 436 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 C3orf56Q8N813 242 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 HIPK4Q8NE63 616 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 ADAMTS16Q8TE57 1224 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 MCHR2Q969V1 340 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF566Q969W8 418 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC25A44Q96H78 314 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 PRSS27Q9BQR3 290 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms