RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 UBL3O95164 117 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 MPZL1O95297 269 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 SNAP29O95721 258 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CLPTM1O96005 669 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 NUDT7P0C024 238 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 PPIAL4FP0DN26 164 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 ARAFP10398 606 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 KITP10721 976 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CD79AP11912 226 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 ANPEPP15144 967 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 NCF2P19878 526 aaPredicted RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 GATA3P23771 443 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CAPZA2P47755 286 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 PTDSS1P48651 473 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 AQP5P55064 265 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 NME5P56597 212 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 DSTNP60981 165 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 RAB1AP62820 205 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CCL8P80075 99 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 MXRA7P84157 204 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 PIGFQ07326 219 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 ZP4Q12836 540 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 FOXL1Q12952 345 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 C1DQ13901 141 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 RAB39AQ14964 217 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 TAF11Q15544 211 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 OCLNQ16625 522 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 PCGF3Q3KNV8 242 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 TMEM255AQ5JRV8 349 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 AVPI1Q5T686 147 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 WDR88Q6ZMY6 472 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 DOK3Q7L591 496 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 UEVLDQ8IX04 471 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 SKA3Q8IX90 412 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 LRRC17Q8N6Y2 441 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 NANPQ8TBE9 248 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 GTF3AQ92664 365 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 STMN2Q93045 179 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 TMEM54Q969K7 222 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 UTP4Q969X6 686 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 RAB39BQ96DA2 213 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 MOGAT1Q96PD6 335 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 TSPAN32Q96QS1 320 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 FOXB1Q99853 325 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 EMC6Q9BV81 110 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CADM1Q9BY67 442 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 DCLRE1BQ9H816 532 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 TPT1P8Q9HAU6 139 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 A4GALTQ9NPC4 353 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 HINT3Q9NQE9 182 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 MED29Q9NX70 200 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 MRPL39Q9NYK5 338 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 TAGLN3Q9UI15 199 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 IFT52Q9Y366 437 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 WIPI2Q9Y4P8 454 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CORINQ9Y5Q5 1042 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 NOX1Q9Y5S8 564 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 CACNG2Q9Y698 323 aa6.21□□□□□ -1.42
YBX3-209ENST00000540747 KMT2CQ8NEZ4 4911 aaKnown RBP6.21□□□□□ -1.42
YBX3-209ENST00000540747 NBEAL2Q6ZNJ1 2754 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 A0A0B4J2E0 115 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 A0A0G2JK05 382 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 IGHV1-69-2A0A0G2JMI3 117 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 A0A1B0GX12 115 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 A0A1W2PPW3 197 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PLPP3O14495 311 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 RFXANKO14593 260 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 TPST2O60704 377 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 CDC14BO60729 498 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 RAB36O95755 333 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PATE4P0C8F1 98 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 ETS2P15036 469 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PRTN3P24158 256 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 GTF2E2P29084 291 aaKnown RBP6.2□□□□□ -1.42
YBX3-209ENST00000540747 PRKAR1BP31321 381 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 CRATP43155 626 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 SLC1A6P48664 564 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 ERVS71-1P61550 626 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 DEFA6Q01524 100 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 MVKQ03426 396 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PUDPQ08623 228 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 DNAL1Q4LDG9 190 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PDCD4Q53EL6 469 aaKnown RBP6.2□□□□□ -1.42
YBX3-209ENST00000540747 ZNF311Q5JNZ3 666 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 KLF17Q5JT82 389 aaPredicted RBP6.2□□□□□ -1.42
YBX3-209ENST00000540747 DCAF12L2Q5VW00 463 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 CARD17Q5XLA6 110 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 LRFN4Q6PJG9 635 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 DHRS4L2Q6PKH6 230 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 TREML4Q6UXN2 200 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 MSANTD1Q6ZTZ1 278 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 PIWIL3Q7Z3Z3 882 aaKnown RBP6.2□□□□□ -1.42
YBX3-209ENST00000540747 PXKQ7Z7A4 578 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 KIRREL3Q8IZU9 778 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 BPIFB2Q8N4F0 458 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 SYT14Q8NB59 555 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 GLB1L3Q8NCI6 653 aaPredicted RBP6.2□□□□□ -1.42
YBX3-209ENST00000540747 DEFB108BQ8NET1 73 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 BBS10Q8TAM1 723 aa6.2□□□□□ -1.42
YBX3-209ENST00000540747 DNAJA4Q8WW22 397 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 540 ms