RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ARPC3O15145 178 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 GP1BBP13224 206 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 PSMD4P55036 377 aaKnown RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 INSM1Q01101 510 aaPredicted RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 ZNF574Q6ZN55 896 aaPredicted RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 SLC29A4Q7RTT9 530 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 ADGRG3Q86Y34 549 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 OR2G2Q8NGZ5 317 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 PCDHGA9Q9Y5G4 932 aaKnown RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 IGLV3-19P01714 112 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 LIPCP11150 499 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 SELENOPP49908 381 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 PRAMEF20Q5VT98 475 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 B3GNTL1Q67FW5 361 aaPredicted RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 ZNF775Q96BV0 537 aaPredicted RBP15.26■□□□□ 0.03
USP28-208ENST00000540438 SPACA5Q96QH8 159 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 INTS14Q96SY0 518 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 OR51J1Q9H342 316 aa15.26■□□□□ 0.03
USP28-208ENST00000540438 RENP00797 406 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SERPINA3P01011 423 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 PDGFBP01127 241 aaPredicted RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 PNMTP11086 282 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SLC2A1P11166 492 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 RAD52P43351 418 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 MAB21L1Q13394 359 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 GPAT4Q86UL3 456 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 PIAS4Q8N2W9 510 aaPredicted RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 OR51A2Q8NGJ7 313 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SPATA2Q9UM82 520 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 FAM172BPA6NC97 362 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 LILRA5A6NI73 299 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 DUX1O43812 170 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 DHFRP00374 187 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 HRGP04196 525 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 HLA-DMAP28067 261 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 UQCRC1P31930 480 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 KIR3DL2P43630 455 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SPOCK1Q08629 439 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 GFOD2Q3B7J2 385 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SLC16A9Q7RTY1 509 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SYS1Q8N2H4 156 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 RPH3AQ9Y2J0 694 aaPredicted RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 A0A1W2PNR3 127 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 H3BMH7 237 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 UBL3O95164 117 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 H2AFB2P0C5Z0 115 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 CFL1P23528 166 aaKnown RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 ELAVL1Q15717 326 aaKnown RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 PWWP2BQ6NUJ5 590 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 BIVMQ86UB2 503 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 SLITRK4Q8IW52 837 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 MRPL22Q9NWU5 206 aaKnown RBP15.25■□□□□ 0.03
USP28-208ENST00000540438 NPFFR2Q9Y5X5 522 aa15.25■□□□□ 0.03
USP28-208ENST00000540438 TCRBV16S1A1N1A0A5B0 115 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 IFNGR1P15260 489 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 DPP4P27487 766 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 POU3F1Q03052 451 aaPredicted RBP15.24■□□□□ 0.03
USP28-208ENST00000540438 YIF1BQ5BJH7 314 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 RTN4RL2Q86UN3 420 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 FAM46BQ96A09 425 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 PTDSS2Q9BVG9 487 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 SMOC1Q9H4F8 434 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 METTL17Q9H7H0 456 aaPredicted RBP15.24■□□□□ 0.03
USP28-208ENST00000540438 EMC9Q9Y3B6 208 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 EML6Q6ZMW3 1958 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 IGKV3D-11A0A0A0MRZ8 115 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 ALOX5APP20292 161 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 SFTPDP35247 375 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 PTCRAQ6ISU1 281 aaPredicted RBP15.24■□□□□ 0.03
USP28-208ENST00000540438 NDUFAF7Q7L592 441 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 KRT77Q7Z794 578 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 PLXDC1Q8IUK5 500 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 DAZLQ92904 295 aaKnown RBP15.24■□□□□ 0.03
USP28-208ENST00000540438 CREB3L1Q96BA8 519 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 C5orf34Q96MH7 638 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 IRF2BPLQ9H1B7 796 aa15.24■□□□□ 0.03
USP28-208ENST00000540438 FRG2CA6NGY1 282 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 ZNF780AO75290 641 aaPredicted RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 GIMD1P0DJR0 217 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 EIF2B1Q14232 305 aaKnown RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 Q499Y3 187 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 C1orf140Q5VVS0 124 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 FAM71CQ8NEG0 241 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 ZNF431Q8TF32 576 aaPredicted RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 UBL7Q96S82 380 aaPredicted RBP15.23■□□□□ 0.03
USP28-208ENST00000540438 HRASLSQ9HDD0 168 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 TAS2R10Q9NYW0 307 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 COQ3Q9NZJ6 369 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 TRAV18A0A075B6X5 111 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 PATE3B3GLJ2 98 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 BGLAPP02818 100 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 RLN1P04808 185 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 ITGA5P08648 1049 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 STOMP27105 288 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 RNF4P78317 190 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 FAM198BQ6UWH4 519 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 CMIPQ8IY22 773 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 EXD3Q8N9H8 876 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 OR1N1Q8NGS0 311 aa15.23■□□□□ 0.03
USP28-208ENST00000540438 ZNF285Q96NJ3 590 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms