RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 VPREB3Q9UKI3 123 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MKLN1Q9UL63 735 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 TIMM22Q9Y584 194 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 USH1CQ9Y6N9 552 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 CENPVL3A0A0U1RRI6 287 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 BTBD17A6NE02 478 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ANKRD61A6NGH8 418 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 NPIPB8E9PQR5 432 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 TBX19O60806 448 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 STX11O75558 287 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 SERPINA5P05154 406 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ENO1P06733 434 aaKnown RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 CD55P08174 381 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 WNT2P09544 360 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 PATE4P0C8F1 98 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 LYL1P12980 280 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CCL2P13500 99 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ZNF43P17038 809 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CALRP27797 417 aaKnown RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 RPL4P36578 427 aaKnown RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 CFHR2P36980 270 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 TGFBR2P37173 567 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 MDH2P40926 338 aaKnown RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 ETV4P43268 484 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CCT3P49368 545 aaKnown RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 NAB1Q13506 487 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 MFSD13AQ14CX5 517 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ARHGAP11BQ3KRB8 267 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 SPDYE7PQ495Y7 208 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 TMEM255AQ5JRV8 349 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 PHYHD1Q5SRE7 291 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 C11orf88Q6PI97 169 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 LRFN4Q6PJG9 635 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 FRRS1Q6ZNA5 592 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 C1orf122Q6ZSJ8 110 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 C3orf62Q6ZUJ4 267 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CYS1Q717R9 158 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ZNF627Q7L945 461 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 RNF144BQ7Z419 303 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 KLBQ86Z14 1044 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 TMEM123Q8N131 208 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 KDM8Q8N371 416 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 FITM2Q8N6M3 262 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ZNF283Q8N7M2 679 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CLHC1Q8NHS4 586 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 IPCEF1Q8WWN9 437 aaPredicted RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 OR2M2Q96R28 347 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CDADC1Q9BWV3 514 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 BCL2L14Q9BZR8 327 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 TRIM31Q9BZY9 425 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 ZNF350Q9GZX5 532 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 CNTD2Q9H8S5 307 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 PALMDQ9NP74 551 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 POFUT2Q9Y2G5 429 aa5.34□□□□□ -1.55
CD44-237ENST00000534082 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.34□□□□□ -1.55
CD44-237ENST00000534082 IGHV1-69DA0A0B4J2H0 117 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 CLDN24A6NM45 220 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 RNASEK-C17orf49H0YIS7 233 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 P2RY10O00398 339 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 AKAP8O43823 692 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 SUPT7LO94864 414 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 MFN2O95140 757 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 SNAP29O95721 258 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 AK1P00568 194 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 IGHV1-69P01742 117 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 ADH4P08319 380 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 OR12D1P0DN82 309 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 PNMTP11086 282 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 SDC1P18827 310 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 HOXD3P31249 432 aaPredicted RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 STX2P32856 288 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 MPV17P39210 176 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 AQP5P55064 265 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 UCP2P55851 309 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 ETF1P62495 437 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 RPS26P62854 115 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 TNFAIP6P98066 277 aaPredicted RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 EMX1Q04741 257 aaPredicted RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 ZNF124Q15973 351 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 UNC50Q53HI1 259 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 CARD17Q5XLA6 110 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 HDXQ7Z353 690 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 C16orf62Q7Z3J2 963 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 PIWIL3Q7Z3Z3 882 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 HMGN2P46Q86SG4 172 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 NDUFA11Q86Y39 141 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 SCCPDHQ8NBX0 429 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 WFDC9Q8NEX5 89 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 OR1J1Q8NGS3 322 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 OR5AK3PQ8NH89 298 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 FGFBP3Q8TAT2 258 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 ACTRT1Q8TDG2 376 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 OIT3Q8WWZ8 545 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 CNOT9Q92600 299 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 MRRFQ96E11 262 aaKnown RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 NEIL1Q96FI4 390 aaPredicted RBP5.33□□□□□ -1.56
CD44-237ENST00000534082 PLEKHA8Q96JA3 519 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 TSSK3Q96PN8 268 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 TMEM237Q96Q45 408 aa5.33□□□□□ -1.56
CD44-237ENST00000534082 SIGLEC11Q96RL6 698 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms