RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 RAP1BP61224 184 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 RAP1AP62834 184 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 ROR2Q01974 943 aaKnown RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 TGFBR3Q03167 851 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 SNTB1Q13884 538 aaKnown RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 TSC22D1Q15714 1073 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 C10orf128Q5T292 105 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 FAHD1Q6P587 224 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 IGFN1Q86VF2 1251 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 LURAP1LQ8IV03 231 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 HS3ST5Q8IZT8 346 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 GPR137CQ8N3F9 429 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 NOXO1Q8NFA2 376 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 OR1K1Q8NGR3 316 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 OR5K1Q8NHB7 308 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 LINC01560Q8TB33 94 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 FANK1Q8TC84 345 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 FNDC8Q8TC99 324 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 LRTOMTQ8WZ04 291 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 HSD17B8Q92506 261 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 HDAC2Q92769 488 aaKnown RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 ZNF837Q96EG3 531 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 POLDIP3Q9BY77 421 aaKnown RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 SMURF2Q9HAU4 748 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 CRLF2Q9HC73 371 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 PDP1Q9P0J1 537 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 REV1Q9UBZ9 1251 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 ADAM18Q9Y3Q7 739 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 TACC2O95359 2948 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 BHLHE40O14503 412 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 IDH3BO43837 385 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 HOXB1P14653 301 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 ZNF23P17027 643 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 CRYGSP22914 178 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 IL32P24001 234 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 SLC6A6P31641 620 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 RPL4P36578 427 aaKnown RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 ERVK-25P63136 954 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 CEACAM16Q2WEN9 425 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 NRN1LQ496H8 165 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 MESTQ5EB52 335 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 CARD17Q5XLA6 110 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 KLHL17Q6TDP4 642 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 WDR31Q8NA23 367 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 OR8D4Q8NGM9 314 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 OR6N1Q8NGY5 312 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 DNAJC9Q8WXX5 260 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 BCL2L2Q92843 193 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 Q96M85 177 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 RDH12Q96NR8 316 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 SNX18Q96RF0 628 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 PKP2Q99959 881 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 RBM4BQ9BQ04 359 aaKnown RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 RBM4Q9BWF3 364 aaKnown RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 PLA2G12AQ9BZM1 189 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 GABARAPL1Q9H0R8 117 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 ZNF556Q9HAH1 456 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 OBP2BQ9NPH6 170 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 B3GAT2Q9NPZ5 323 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 MAGED1Q9Y5V3 778 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-206ENST00000531480 ITPR2Q14571 2701 aa12.69□□□□□ -0.38
CPSF1-206ENST00000531480 ARPC4-TTLL3A0A0A6YYG9 625 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 M0R3G1 203 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 RAD51DO75771 328 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 KRT33AO76009 404 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 NR2C1P13056 603 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ACVR1BP36896 505 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 RPS6KA3P51812 740 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 RAD23AP54725 363 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 TAB1Q15750 504 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 THEM4Q5T1C6 240 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 OGFRL1Q5TC84 451 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ANKRD34AQ69YU3 496 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ANKRD16Q6P6B7 361 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 AMIGO2Q86SJ2 522 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ADCK1Q86TW2 530 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 MCHR2Q969V1 340 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 GTPBP3Q969Y2 492 aaKnown RBP12.68□□□□□ -0.38
CPSF1-206ENST00000531480 SAMD8Q96LT4 415 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 MED18Q9BUE0 208 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ULBP2Q9BZM5 246 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 EGLN3Q9H6Z9 239 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 SLC17A5Q9NRA2 495 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ZNF226Q9NYT6 803 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 VSX1Q9NZR4 365 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-206ENST00000531480 GRHPRQ9UBQ7 328 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 NKX1-2Q9UD57 310 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-206ENST00000531480 IL20RAQ9UHF4 553 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 SLC25A15Q9Y619 301 aa12.68□□□□□ -0.38
CPSF1-206ENST00000531480 ABCA4P78363 2273 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 TEX13CA0A0J9YWL9 993 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 CIB4A0PJX0 185 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 DEFB108AA8MXU0 73 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 SIAH2O43255 324 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 DHHO43323 396 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 QDPRP09417 244 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 PRKACGP22612 351 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 PAX7P23759 505 aa12.67□□□□□ -0.38
CPSF1-206ENST00000531480 LOXP28300 417 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-206ENST00000531480 CLRN1P58418 232 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms