RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 YIPF5Q969M3 257 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ZNF566Q969W8 418 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 SLC25A44Q96H78 314 aaPredicted RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 ZNF426Q9BUY5 554 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 SLC19A3Q9BZV2 496 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 PCDHAC1Q9H158 963 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ZNF385DQ9H6B1 395 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ZNF275Q9NSD4 429 aaPredicted RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 TMEM38BQ9NVV0 291 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ZNF346Q9UL40 294 aaKnown RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 FZR1Q9UM11 496 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 NDUFAF1Q9Y375 327 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 A0A1W2PPW3 197 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 CPSF4LA6NMK7 179 aaKnown RBP9.72□□□□□ -0.85
VPS28-214ENST00000531032 FAM157AC9JC47 383 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 M0QX08 132 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 WNT9BO14905 357 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 CH25HO95992 272 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 VIMP08670 466 aaKnown RBP9.72□□□□□ -0.85
VPS28-214ENST00000531032 ASAH2BP0C7U1 165 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 PGA4P0DJD7 388 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 PGA3P0DJD8 388 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 NAT2P11245 290 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 MELKQ14680 651 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 NRN1LQ496H8 165 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 RGS7BPQ6MZT1 257 aaPredicted RBP9.72□□□□□ -0.85
VPS28-214ENST00000531032 DPPA2Q7Z7J5 298 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 TSPYL5Q86VY4 417 aaPredicted RBP9.72□□□□□ -0.85
VPS28-214ENST00000531032 PAQR4Q8N4S7 273 aaPredicted RBP9.72□□□□□ -0.85
VPS28-214ENST00000531032 LRRC17Q8N6Y2 441 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 SLC30A7Q8NEW0 376 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 OR4D11Q8NGI4 311 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 TMEM186Q96B77 213 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 MPP4Q96JB8 637 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 CGREF1Q99674 301 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 ZNF416Q9BWM5 594 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 TMEM120AQ9BXJ8 343 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 NARFLQ9H6Q4 476 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 NANSQ9NR45 359 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 MRGBPQ9NV56 204 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 HIF1ANQ9NWT6 349 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 DUSP13Q9UII6 198 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 METRNQ9UJH8 293 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 ZNF229Q9UJW7 825 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 SLC7A7Q9UM01 511 aa9.72□□□□□ -0.85
VPS28-214ENST00000531032 IGLV3-9A0A075B6K5 115 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 A0A0A6YYJ9 748 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 SLC22A23A1A5C7 686 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 TRAPPC13A5PLN9 417 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 DHHO43323 396 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 RNF13O43567 381 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 FARS2O95363 451 aaKnown RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 SNAP29O95721 258 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 MSMBP08118 114 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 GAAP10253 952 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 ZNF250P15622 560 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 CD247P20963 164 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 PCGF2P35227 344 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 MTPNP58546 118 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 LMO4P61968 165 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 SF3A3Q12874 501 aaKnown RBP eCLIP9.71□□□□□ -0.863e-6■■■■□ 25.6
VPS28-214ENST00000531032 SELPLGQ14242 412 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 HIST3H3Q16695 136 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 MMEL1Q495T6 779 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 TTC33Q6PID6 262 aaPredicted RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 PATL1Q86TB9 770 aaKnown RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 RETREG3Q86VR2 466 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 RBM45Q8IUH3 476 aaKnown RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 SLC30A8Q8IWU4 369 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 SEMA6DQ8NFY4 1073 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 ZFAND2BQ8WV99 257 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 TAMM41Q96BW9 452 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 SEPHS2Q99611 448 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 SH3GL3Q99963 347 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 C1orf198Q9H425 327 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 METTL17Q9H7H0 456 aaPredicted RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 KAT8Q9H7Z6 458 aaKnown RBP9.71□□□□□ -0.86
VPS28-214ENST00000531032 FGFR1OP2Q9NVK5 253 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 GRIP1Q9Y3R0 1128 aa9.71□□□□□ -0.86
VPS28-214ENST00000531032 C17orf100A8MU93 164 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 KPNA4O00629 521 aaPredicted RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 PPIHO43447 177 aaKnown RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 VENTXO95231 258 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 BCL10O95999 233 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 CLPTM1O96005 669 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 IGHG1P01857 330 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 HIST1H2ABP04908 130 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 QDPRP09417 244 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 FAM157BP0CG42 384 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 CCL2P13500 99 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 MAGEB1P43366 347 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 ARFIP2P53365 341 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 CRYBA2P53672 197 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 KLF3P57682 345 aaPredicted RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 SELENOVP59797 346 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 MAPRE2Q15555 327 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 NKPD1Q17RQ9 610 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 SLC36A2Q495M3 483 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 METTL21CQ5VZV1 264 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TMEM53Q6P2H8 277 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms