RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 POU2F3Q9UKI9 436 aa9.21□□□□□ -0.94
CD44-227ENST00000528086 AP3M1Q9Y2T2 418 aa9.21□□□□□ -0.94
CD44-227ENST00000528086 MED31Q9Y3C7 131 aa9.21□□□□□ -0.94
CD44-227ENST00000528086 ENPP4Q9Y6X5 453 aa9.21□□□□□ -0.94
CD44-227ENST00000528086 TRAV27A0A087WT01 109 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 TRBV4-1A0A0J9YWV2 114 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 DHHO43323 396 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 AKAP8O43823 692 aaKnown RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 SSX4O60224 188 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 MGRN1O60291 552 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 DIRAS1O95057 198 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 SLC2A10O95528 541 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 ZNF682O95780 498 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 IFNA14P01570 189 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 IFNW1P05000 195 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 MMP7P09237 267 aaPredicted RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 QDPRP09417 244 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 OR4A8P0C604 315 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 T-ENOLP0DO92 83 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 UMPSP11172 480 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 IFI30P13284 250 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 ACADSP16219 412 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 LIMS1P48059 325 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 GIPRP48546 466 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 DBPQ10586 325 aaPredicted RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 ST3GAL3Q11203 375 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 NPRL3Q12980 569 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 EFNB3Q15768 340 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 IFI44LQ53G44 452 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 TMEM255AQ5JRV8 349 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 C10orf128Q5T292 105 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 GLYATQ6IB77 296 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 SLC25A47Q6Q0C1 308 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 FBXL14Q8N1E6 418 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 SLC22A24Q8N4F4 322 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 FITM2Q8N6M3 262 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 ZNF525Q8N782 197 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 ANKS4BQ8N8V4 417 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 NUP37Q8NFH4 326 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 OR13C2Q8NGS9 318 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 ZNF519Q8TB69 540 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 GEMIN6Q8WXD5 167 aaKnown RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 ZNF566Q969W8 418 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 BPIFA2Q96DR5 249 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 CMTM5Q96DZ9 223 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 HS6ST2Q96MM7 605 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 KCTD14Q9BQ13 255 aaPredicted RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 PLK3Q9H4B4 646 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 INIPQ9NRY2 104 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 MYEF2Q9P2K5 600 aaKnown RBP9.2□□□□□ -0.94
CD44-227ENST00000528086 POFUT2Q9Y2G5 429 aa9.2□□□□□ -0.94
CD44-227ENST00000528086 DNHD1Q96M86 4753 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 NPIPB13A6NJU9 1138 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 VWC2LB2RUY7 222 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 NPIPB4C9JG80 1138 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 PTP4A3O75365 173 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 OR6A2O95222 327 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 BCL10O95999 233 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 IGHMP01871 453 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CRYAAP02489 173 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 HSD17B1P14061 328 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CDAP32320 146 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 ARR3P36575 388 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 SERPINF1P36955 418 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 GPR4P46093 362 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 OMPP47874 163 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 RAB1AP62820 205 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 RAB39AQ14964 217 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 TRAM2Q15035 370 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 GSG1Q2KHT4 349 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 PODNL1Q6PEZ8 512 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 VHLLQ6RSH7 139 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 THSD4Q6ZMP0 1018 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 MBOAT2Q6ZWT7 520 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 FAM122BQ7Z309 247 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CPLX4Q7Z7G2 160 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 LRP11Q86VZ4 500 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 PRIMA1Q86XR5 153 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CCDC36Q8IYA8 594 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CDK20Q8IZL9 346 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CPEB3Q8NE35 698 aaKnown RBP9.19□□□□□ -0.94
CD44-227ENST00000528086 NOXO1Q8NFA2 376 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 OR4K5Q8NGD3 323 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 OR51A7Q8NH64 312 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 ACOT11Q8WXI4 607 aaPredicted RBP9.19□□□□□ -0.94
CD44-227ENST00000528086 TRMT61AQ96FX7 289 aaKnown RBP9.19□□□□□ -0.94
CD44-227ENST00000528086 TSPAN32Q96QS1 320 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 CCT8L2Q96SF2 557 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 TXNIPQ9H3M7 391 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 ZNF442Q9H7R0 627 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 GORASP2Q9H8Y8 452 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 SPAG4Q9NPE6 437 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 FAIMQ9NVQ4 179 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 ZNF346Q9UL40 294 aaKnown RBP9.19□□□□□ -0.94
CD44-227ENST00000528086 ARL2BPQ9Y2Y0 163 aa9.19□□□□□ -0.94
CD44-227ENST00000528086 FBN1P35555 2871 aaKnown RBP9.18□□□□□ -0.94
CD44-227ENST00000528086 INAFM1C9JVW0 142 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 MCIDASD6RGH6 385 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 hCG_2039718K7EN88 272 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 IGHG1P01857 330 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms