RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZNF227Q86WZ6 799 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 ZNF679Q8IYX0 411 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 OR56B4Q8NH76 319 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 DUSP19Q8WTR2 217 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 HSD17B8Q92506 261 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 HAVCR1Q96D42 359 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 SLC25A38Q96DW6 304 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 C4orf45Q96LM5 186 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 NUDT22Q9BRQ3 303 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 TSPAN10Q9H1Z9 355 aaPredicted RBP13.41□□□□□ -0.26
NUP54-217ENST00000514987 ANKRD10Q9NXR5 420 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 CTSFQ9UBX1 484 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 ING4Q9UNL4 249 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 K7ESF4 209 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 ZNF593O00488 134 aaPredicted RBP13.41□□□□□ -0.26
NUP54-217ENST00000514987 GMFGO60234 142 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 PRAF2O60831 178 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 CYC1P08574 325 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 GIFP27352 417 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 GDNFP39905 211 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 APOBEC1P41238 236 aaKnown RBP13.41□□□□□ -0.26
NUP54-217ENST00000514987 NR0B2Q15466 257 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 COL28A1Q2UY09 1125 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 NKAIN1Q4KMZ8 207 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 ELFN2Q5R3F8 820 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 TMEM69Q5SWH9 247 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 C1QL3Q5VWW1 255 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 ANKRD37Q7Z713 158 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 DND1Q8IYX4 353 aaKnown RBP13.41□□□□□ -0.26
NUP54-217ENST00000514987 SLC7A5P1Q8MH63 180 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 OR5L2Q8NGL0 311 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 OR8K3Q8NH51 312 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 TTC9Q92623 222 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 SMAD5Q99717 465 aaKnown RBP13.41□□□□□ -0.26
NUP54-217ENST00000514987 OR51J1Q9H342 316 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 OR5V1Q9UGF6 321 aa13.41□□□□□ -0.26
NUP54-217ENST00000514987 GON4LQ3T8J9 2241 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 TRAV6A0A075B6T7 132 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 IGLV1-36A0A0B4J1U3 117 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 SLC22A23A1A5C7 686 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 ACOT7O00154 380 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 ZNF208O43345 1280 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 SLC16A7O60669 478 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 ALOX12BO75342 701 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 ONECUT2O95948 504 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 MSX1P28360 303 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 DAP3P51398 398 aaKnown RBP13.4□□□□□ -0.26
NUP54-217ENST00000514987 SHBQ15464 509 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 TEX30Q5JUR7 227 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 FGD2Q7Z6J4 655 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 LUZP2Q86TE4 346 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 NFAM1Q8NET5 270 aaPredicted RBP13.4□□□□□ -0.26
NUP54-217ENST00000514987 LILRB4Q8NHJ6 448 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 MFSD8Q8NHS3 518 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 SYNPRQ8TBG9 265 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 RNF128Q8TEB7 428 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 MCHR2Q969V1 340 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 RANBP3Q9H6Z4 567 aaPredicted RBP13.4□□□□□ -0.26
NUP54-217ENST00000514987 ELOVL3Q9HB03 270 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 SLC22A11Q9NSA0 550 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 SLCO1C1Q9NYB5 712 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 STEAP1Q9UHE8 339 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 FOXJ3Q9UPW0 622 aa13.4□□□□□ -0.26
NUP54-217ENST00000514987 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 CCDC85CA6NKD9 419 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 SOX2P48431 317 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 PTH2RP49190 550 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 GLO1Q04760 184 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 ESPNLQ6ZVH7 1005 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 TMEM106AQ96A25 262 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 NXPE2Q96DL1 559 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 SDHAF3Q9NRP4 125 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 KCNG2Q9UJ96 466 aa13.39□□□□□ -0.27
NUP54-217ENST00000514987 A0A1B0GVI7 797 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 FTCDNL1E5RQL4 147 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 ADAM10O14672 748 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 ANXA3P12429 323 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 ADRA2CP18825 462 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 RIDAP52758 137 aaKnown RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 DCDP81605 110 aaKnown RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 INSM1Q01101 510 aaPredicted RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 DMWDQ09019 674 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 RIPPLY1Q0D2K3 151 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 FCN2Q15485 313 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 MEP1BQ16820 701 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 RNASE12Q5GAN4 147 aaKnown RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 CREB3L2Q70SY1 520 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 PRSS45Q7RTY3 260 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 KRT77Q7Z794 578 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 TMPRSS12Q86WS5 348 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 ABCA7Q8IZY2 2146 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 PRSS35Q8N3Z0 413 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 APCDD1LQ8NCL9 501 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 HGDQ93099 445 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 DDIT4LQ96D03 193 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 ZNF587Q96SQ5 575 aaPredicted RBP13.38□□□□□ -0.27
NUP54-217ENST00000514987 POTEKPQ9BYX7 375 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 TMEM165Q9HC07 324 aa13.38□□□□□ -0.27
NUP54-217ENST00000514987 SLC17A5Q9NRA2 495 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms