RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CAMK2AQ9UQM7 478 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 LOC102723971A0A1B0GUV8 181 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 OR5H14A6NHG9 310 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 RNGTTO60942 597 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 P04436 131 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ICAM2P13598 275 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ARSAP15289 507 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ANXA7P20073 488 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 AHRP35869 848 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SRPXP78539 464 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 GABRG1Q8N1C3 465 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 LINC00469Q8N7U9 141 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 FER1L6-AS2Q96M78 137 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ZPBPQ9BS86 351 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 TPSD1Q9BZJ3 242 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 GORASP2Q9H8Y8 452 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 LAMB2P55268 1798 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 MGMTP16455 207 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 CST5P28325 142 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 NOVA1P51513 510 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 LEXMQ3ZCV2 418 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SERPINA11Q86U17 422 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 VRK3Q8IV63 474 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 LRRC56Q8IYG6 542 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF440Q8IYI8 595 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 TMEM234Q8WY98 164 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 PRODH2Q9UF12 536 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SMCHD1A6NHR9 2005 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 A8MVM7 634 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 HIDE1A8MVS5 230 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 CHEK1O14757 476 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 DRD2P14416 443 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 PTGER1P34995 402 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 ELAVL3Q14576 367 aaKnown RBP8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 PLK5Q496M5 336 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 SHEQ5VZ18 495 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 CPZQ66K79 652 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF761Q86XN6 746 aaPredicted RBP8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM102Q8N9M5 508 aaPredicted RBP8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF738Q8NE65 137 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 CREB3L4Q8TEY5 395 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 MBD3L1Q8WWY6 194 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 MCHR2Q969V1 340 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 PARP12Q9H0J9 701 aaKnown RBP8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 ANKRD19PQ9H560 264 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 SIRT3Q9NTG7 399 aaPredicted RBP8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC7A7Q9UM01 511 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 PCDHA9Q9Y5H5 950 aa8.09□□□□□ -1.12
LIMCH1-218ENST00000513024 SOCS6O14544 535 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF26P17031 533 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF91Q05481 1191 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TOMM34Q15785 309 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TUSC1Q2TAM9 212 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC35F2Q8IXU6 374 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM104Q8NE00 496 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SDR9C7Q8NEX9 313 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR13C5Q8NGS8 318 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 CD200R1Q8TD46 325 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 CHAC2Q8WUX2 184 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 DUS3LQ96G46 650 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TPPP3Q9BW30 176 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 NXF2Q9GZY0 626 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 INPP5EQ9NRR6 644 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC6A14Q9UN76 642 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 MYO18AQ92614 2054 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 LNP1A1A4G5 178 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 APEHP13798 732 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 FBLP22087 321 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 MMP11P24347 488 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ADARB1P78563 741 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PMS2P11Q13670 270 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF528Q3MIS6 628 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 FAM209AQ5JX71 171 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SYT6Q5T7P8 510 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR4C11Q6IEV9 310 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 STEAP1BQ6NZ63 245 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 DHRS13Q6UX07 377 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 KLHDC8AQ8IYD2 350 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZADH2Q8N4Q0 377 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR1S2Q8NGQ3 325 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM37Q8WXS4 190 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 CDS1Q92903 461 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TBC1D20Q96BZ9 403 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF689Q96CS4 500 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SMIM7Q9BQ49 75 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 TRAF4Q9BUZ4 470 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PARD6GQ9BYG4 376 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 MTHFD2LQ9H903 347 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OR1A1Q9P1Q5 309 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SRPK3Q9UPE1 567 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 CITO14578 2027 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 BCAT2O15382 392 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 GPRIN2O60269 458 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 OTX2P32243 289 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 PCGF2P35227 344 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 HAAOP46952 286 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC5A12Q1EHB4 618 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 ADPRMQ3LIE5 342 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 THEM4Q5T1C6 240 aa8.08□□□□□ -1.12
LIMCH1-218ENST00000513024 NCR3LG1Q68D85 454 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms