RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR14A16Q8NHC5 309 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC37A2Q8TED4 501 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 PNPLA2Q96AD5 504 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 TOE1Q96GM8 510 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LCORQ96JN0 433 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF578Q96N58 590 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 TPSD1Q9BZJ3 242 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SELENOIQ9C0D9 397 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 HRH4Q9H3N8 390 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OBP2AQ9NY56 170 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ANK1P16157 1881 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A0B4J2A0 478 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 TUBAL3A6NHL2 446 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 D6RAR5 112 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 PYCARD-AS1I3L0S3 204 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 PRKNO60260 465 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 HTR3BO95264 441 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 CD3DP04234 171 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LPLP06858 475 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC22A6Q4U2R8 563 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM69BQ5VUD6 431 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LINC00346Q8IVM7 164 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 GABRG1Q8N1C3 465 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF565Q8N9K5 539 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OR4N2Q8NGD1 307 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OR4K15Q8NH41 348 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LRRC46Q96FV0 321 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 HIST1H2AAQ96QV6 131 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ARPC5LQ9BPX5 153 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SHPKQ9UHJ6 478 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 RNF215Q9Y6U7 377 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 CACNA1CQ13936 2221 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 P2RY10O00398 339 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 SNAPINO95295 136 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ACSM4P0C7M7 580 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF43P17038 809 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DCAF7P61962 342 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PPP2CBP62714 309 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PPP2CAP67775 309 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 HTRA3P83110 453 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM156Q8N614 296 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RELL2Q8NC24 303 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM71CQ8NEG0 241 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR11H7Q8NGC8 314 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR4C16Q8NGL9 310 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MFSD8Q8NHS3 518 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MAP3K3Q99759 626 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DEFB126Q9BYW3 111 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 SERGEFQ9UGK8 458 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ATPIF1Q9UII2 106 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 LSM5Q9Y4Y9 91 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 SDK1Q7Z5N4 2213 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 LCTP09848 1927 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A1W2PPV9 198 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 GGT3PA6NGU5 568 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TOR1AO14656 332 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RBMXL2O75526 392 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TSPAN15O95858 294 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF85Q03923 595 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 GNMTQ14749 295 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C2orf76Q3KRA6 126 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 KRBOX4Q5JUW0 171 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DMKNQ6E0U4 476 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MRM1Q6IN84 353 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PLXDC1Q8IUK5 500 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR13H1Q8NG92 308 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR4D9Q8NGE8 314 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RSC1A1Q92681 617 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PTP4A1Q93096 173 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 CMTM3Q96MX0 182 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C8orf33Q9H7E9 229 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C19orf25Q9UFG5 118 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PLXNA1Q9UIW2 1896 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TMED7-TICAM2A0A0A6YYA0 188 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A1B0GV50 99 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 NPIPA2E9PIF3 369 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 NPIPA3F8WFD2 350 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 BHLHE40O14503 412 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OPN1LWP04000 364 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM225BP0DP42 221 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MYOGP15173 224 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MAGEB1P43366 347 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 CAMLGP49069 296 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 POLR2HP52434 150 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 CLDN6P56747 220 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RPL18Q07020 188 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DOC2BQ14184 412 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DEFB133Q30KQ1 61 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PLA1AQ53H76 456 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 EEF1A1P5Q5VTE0 462 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OTPQ5XKR4 325 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 LCN10Q6JVE6 187 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C3orf33Q6P1S2 294 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 PAPD4Q6PIY7 484 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RASGRP3Q8IV61 690 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DND1Q8IYX4 353 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5L2Q8NGL0 311 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2G2Q8NGZ5 317 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC46A1Q96NT5 459 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 CUTCQ9NTM9 273 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms