RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PRKNO60260 465 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CNMDO75829 334 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 MT-ND4LP03901 98 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TRGC2P03986 189 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PRKAR2AP13861 404 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NPPBP16860 134 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 BMP7P18075 431 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CD52P31358 61 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 RPL4P36578 427 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SULT1A1P50225 295 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 YBEYP58557 167 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 FKBP1AP62942 108 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 RELQ04864 619 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 LTBQ06643 244 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 C9orf64Q5T6V5 341 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 STEAP1BQ6NZ63 245 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 GDF7Q7Z4P5 450 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PXKQ7Z7A4 578 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NRROSQ86YC3 692 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TMEM86AQ8N2M4 240 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 GPRC5AQ8NFJ5 357 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 OR10J5Q8NHC4 309 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF480Q8WV37 535 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 KISS1RQ969F8 398 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PRAP1Q96NZ9 151 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 MRPL37Q9BZE1 423 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 FBXO44Q9H4M3 255 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TCF7L1Q9HCS4 588 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 FLRT3Q9NZU0 649 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CACFD1Q9UGQ2 172 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 FBXL21Q9UKT6 434 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 V9GY05 133 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PLXNA4Q9HCM2 1894 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 COL5A3P25940 1745 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SIP14410 1827 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 RP1P56715 2156 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PDCD11Q14690 1871 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TRIOO75962 3097 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 IGLV3-10A0A075B6K4 115 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 H0YIZ8 118 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 H7C1C5 153 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PHYHO14832 338 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GRM6O15303 877 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LEFTY1O75610 366 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RAB3DO95716 219 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PLGP00747 810 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FGBP02675 491 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MMP3P08254 477 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM157CP0CG43 387 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GLP1RP43220 463 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CDH4P55283 916 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NRG3P56975 720 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LCN6P62502 163 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CXADRP78310 365 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SIRPAP78324 504 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FUT5Q11128 374 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MRPL58Q14197 206 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ERV3-1Q14264 604 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 GRB14Q14449 540 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM78AQ5JUQ0 283 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OR4C11Q6IEV9 310 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CD300LGQ6UXG3 332 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF620Q6ZNG0 422 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SLCO4C1Q6ZQN7 724 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MSANTD1Q6ZTZ1 278 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LRRC56Q8IYG6 542 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC43A2Q8N370 569 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZSCAN4Q8NAM6 433 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TMIEQ8NEW7 156 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 UBTD2Q8WUN7 234 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RNF141Q8WVD5 230 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OSTF1Q92882 214 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FGF13Q92913 245 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 RARRES2Q99969 163 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 OCSTAMPQ9BR26 566 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ZDHHC6Q9H6R6 413 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SFXN1Q9H9B4 322 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ADGRL4Q9HBW9 690 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NRIP3Q9NQ35 241 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 FBXO34Q9NWN3 711 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 VSX1Q9NZR4 365 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ABRACLQ9P1F3 81 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CARHSP1Q9Y2V2 147 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 NPFFR2Q9Y5X5 522 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 LOC102724200A0A096LPH7 203 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 DCDC2BA2VCK2 349 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TVP23AA6NH52 213 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ACOT7O00154 380 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PLPP1O14494 284 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 F10P00742 488 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SFTPBP07988 381 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 HOXC4P09017 264 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 CXCL1P09341 107 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 ADRB3P13945 408 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 KLK2P20151 261 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 MAPK3P27361 379 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SERPINF1P36955 418 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 PBX2P40425 430 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 TFPI2P48307 235 aa6.61□□□□□ -1.35
LIMCH1-207ENST00000508466 SMIM11AP58511 58 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms