RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SLC3A1Q07837 685 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 HFEQ30201 348 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 PHYHD1Q5SRE7 291 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC35D2Q76EJ3 337 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 C11orf65Q8NCR3 313 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC26A7Q8TE54 656 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 RASSF5Q8WWW0 418 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 TXNDC15Q96J42 360 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 OR52B2Q96RD2 323 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 MCHR1Q99705 422 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 USH1CQ9Y6N9 552 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 PLSCR5A0PG75 271 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 GMNCA6NCL1 334 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 FAM157AC9JC47 383 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 MCIDASD6RGH6 385 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 SNAP29O95721 258 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 IGHG1P01857 330 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 UMPSP11172 480 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 COL8A2P25067 703 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 FPR2P25090 351 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 APLNRP35414 380 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 CDH12P55289 794 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 WDR4P57081 412 aaKnown RBP18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 CLRN1P58418 232 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 MAD2L1BPQ15013 274 aaPredicted RBP18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC16A14Q7RTX9 510 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 BPIFB2Q8N4F0 458 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 NANPQ8TBE9 248 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 MPP4Q96JB8 637 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 MOGAT1Q96PD6 335 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 PLA2G12AQ9BZM1 189 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC19A3Q9BZV2 496 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 RACGAP1Q9H0H5 632 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF665Q9H7R5 613 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 CCDC167Q9P0B6 97 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 EIF3KQ9UBQ5 218 aaKnown RBP18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 FZR1Q9UM11 496 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 GMEB1Q9Y692 573 aa18.03■□□□□ 0.48
SQSTM1-210ENST00000506042 IGHV1-69-2A0A0G2JMI3 117 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 DHHO43323 396 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 VENTXO95231 258 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 MPZL1O95297 269 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 COMPP49747 757 aaPredicted RBP18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 SEC24CP53992 1094 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 HILS1P60008 231 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 HSF2Q03933 536 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ZP4Q12836 540 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 CYP51A1Q16850 503 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ZMAT1Q5H9K5 638 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 INTS11Q5TA45 600 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 BLOC1S3Q6QNY0 202 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 RBMS3Q6XE24 437 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 NANOGNBQ7Z5D8 188 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 RETREG3Q86VR2 466 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ICA1LQ8NDH6 482 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 SEMA6DQ8NFY4 1073 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 TMEM54Q969K7 222 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ELMOD3Q96FG2 381 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF75AQ96N20 296 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 EGLN1Q9GZT9 426 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 SLCO1B3Q9NPD5 702 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 TMEM38BQ9NVV0 291 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF229Q9UJW7 825 aa18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 V9GYY5 206 aaPredicted RBP18.02■□□□□ 0.48
SQSTM1-210ENST00000506042 NBEAL1Q6ZS30 2694 aa18.02■□□□□ 0.47
SQSTM1-210ENST00000506042 A0A1W2PRG6 482 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CENPBD1B2RD01 187 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 IGFBP1P08833 259 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 FAM157BP0CG42 384 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 GPX2P18283 190 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 AQP1P29972 269 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 GCH1P30793 250 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CRYBB2P43320 205 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CCL8P80075 99 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 DCAF12L2Q5VW00 463 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 EPGNQ6UW88 154 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 THSD4Q6ZMP0 1018 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 SKA3Q8IX90 412 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 RBM15BQ8NDT2 890 aaKnown RBP18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 SAP30LQ9HAJ7 183 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 NTN4Q9HB63 628 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CCNB1IP1Q9NPC3 277 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CYSLTR2Q9NS75 346 aa18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 CGGBP1Q9UFW8 167 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-210ENST00000506042 TPST1O60507 370 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 ERLIN1O75477 346 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 ZNF250P15622 560 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 LIPAP38571 399 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 GUCA1AP43080 201 aaPredicted RBP18■□□□□ 0.47
SQSTM1-210ENST00000506042 DAP3P51398 398 aaKnown RBP18■□□□□ 0.47
SQSTM1-210ENST00000506042 MAGOHP61326 146 aaKnown RBP18■□□□□ 0.47
SQSTM1-210ENST00000506042 PATL1Q86TB9 770 aaKnown RBP18■□□□□ 0.47
SQSTM1-210ENST00000506042 LRP11Q86VZ4 500 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 LRRC8CQ8TDW0 803 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 ST7LQ8TDW4 575 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 CCDC28BQ9BUN5 200 aa18■□□□□ 0.47
SQSTM1-210ENST00000506042 IGLV3-9A0A075B6K5 115 aa17.99■□□□□ 0.47
SQSTM1-210ENST00000506042 TRAPPC13A5PLN9 417 aa17.99■□□□□ 0.47
SQSTM1-210ENST00000506042 CDC14BO60729 498 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms