RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PIN1P1O15428 100 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 LANCL1O43813 399 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 AKR7A3O95154 331 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 ANXA2P07355 339 aaKnown RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 APOBEC1P41238 236 aaKnown RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 SF3B4Q15427 424 aaKnown RBP eCLIP10.82□□□□□ -0.682e-6■■□□□ 13.6
NUP54-202ENST00000502850 ACKR1Q16570 336 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 PRAMEF17Q5VTA0 474 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 LYSMD4Q5XG99 296 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 POMZP3Q6PJE2 187 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 TSSK4Q6SA08 328 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 LYPD4Q6UWN0 246 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 STAC2Q6ZMT1 411 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 COX15Q7KZN9 410 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 LINGO2Q7L985 606 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 DPY19L4Q7Z388 723 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 ANKRD37Q7Z713 158 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 OR4D9Q8NGE8 314 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 ZFAND1Q8TCF1 268 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 THEM6Q8WUY1 208 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 TTC9Q92623 222 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 MIB2Q96AX9 1013 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 SLC25A36Q96CQ1 311 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 C4orf45Q96LM5 186 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 FYTTD1Q96QD9 318 aaKnown RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 NUDT22Q9BRQ3 303 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 SLC25A18Q9H1K4 315 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 LIN7BQ9HAP6 207 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 PRMT8Q9NR22 394 aaPredicted RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 MCUBQ9NWR8 336 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 FRRS1LQ9P0K9 344 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 CTSFQ9UBX1 484 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 RARRES3Q9UL19 164 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 B9D1Q9UPM9 204 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 MRPS7Q9Y2R9 242 aaKnown RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 KLHDC2Q9Y2U9 406 aa10.82□□□□□ -0.68
NUP54-202ENST00000502850 RBMX2Q9Y388 322 aaKnown RBP10.82□□□□□ -0.68
NUP54-202ENST00000502850 KNL1Q8NG31 2342 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 TRBV5-7A0A0A0MS05 114 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 TRABD2BA6NFA1 517 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 PRR32B1ATL7 298 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 FAM47E-STBD1D6RA91 191 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 C11orf98E9PRG8 122 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 H7C1C5 153 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 PLPP3O14495 311 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ZNF208O43345 1280 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 PRAF2O60831 178 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ALOX12BO75342 701 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 KRT33AO76009 404 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ONECUT2O95948 504 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 HLA-DQA2P01906 255 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 TCRBP04435 133 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 CD3GP09693 182 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 TFPIP10646 304 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 DPP4P27487 766 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 MSX1P28360 303 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 BTCP35070 178 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 GZMKP49863 264 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 EFNA3P52797 238 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ART1P52961 327 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 LCN6P62502 163 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 DCDP81605 110 aaKnown RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 DGCR2P98153 550 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ROM1Q03395 351 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 GLO1Q04760 184 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ZP4Q12836 540 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 FAPQ12884 760 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 TNK1Q13470 666 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 KLF9Q13886 244 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 TOMM34Q15785 309 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 CLPPQ16740 277 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 COL28A1Q2UY09 1125 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 NKAIN1Q4KMZ8 207 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 HES5Q5TA89 166 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 CD276Q5ZPR3 534 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 FAM199XQ6PEV8 388 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 LANCL3Q6ZV70 420 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 BTN2A1Q7KYR7 527 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 GLCCI1Q86VQ1 547 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 LSRQ86X29 649 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 ADGRG3Q86Y34 549 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 SIAH3Q8IW03 269 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ZNF679Q8IYX0 411 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 CMTM4Q8IZR5 234 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 SUMF1Q8NBK3 374 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 ZBTB44Q8NCP5 570 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 OR56B4Q8NH76 319 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 NAT6Q93015 286 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 RNF166Q96A37 237 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 DDIT4LQ96D03 193 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 HAVCR1Q96D42 359 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 SCMH1Q96GD3 660 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 HYLS1Q96M11 299 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 GFM1Q96RP9 751 aaKnown RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 CACNG6Q9BXT2 260 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 RTN4RQ9BZR6 473 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 SDHAF3Q9NRP4 125 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 NUDT15Q9NV35 164 aa10.81□□□□□ -0.68
NUP54-202ENST00000502850 PAQR5Q9NXK6 330 aaPredicted RBP10.81□□□□□ -0.68
NUP54-202ENST00000502850 CLEC4AQ9UMR7 237 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms