RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PEX16Q9Y5Y5 336 aa2.02□□□□□ -2.09
VPS50-219ENST00000495039 ATAD2BQ9ULI0 1458 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 MROH7-TTC4A0A0A0MT08 1334 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 CENPJQ9HC77 1338 aaPredicted RBP2.01□□□□□ -2.09
VPS50-219ENST00000495039 FAM240BA0A1B0GVZ2 78 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 CIB4A0PJX0 185 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 FOXE1O00358 373 aaPredicted RBP2.01□□□□□ -2.09
VPS50-219ENST00000495039 KMOO15229 486 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 EIF3GO75821 320 aaKnown RBP eCLIP2.01□□□□□ -2.09
VPS50-219ENST00000495039 CD5P06127 495 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 ATP1B2P14415 290 aaPredicted RBP2.01□□□□□ -2.09
VPS50-219ENST00000495039 ETS2P15036 469 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 MX1P20591 662 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 AK4P27144 223 aaPredicted RBP2.01□□□□□ -2.09
VPS50-219ENST00000495039 ZMYND11Q15326 602 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 LINC00483Q53H64 154 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 C6orf226Q5I0X4 101 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 RUFY3Q7L099 469 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 STRADAQ7RTN6 431 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 TMEM135Q86UB9 458 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 LHFPL3Q86UP9 236 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 OR4F6Q8NGB9 312 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 OR1L6Q8NGR2 347 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 LRRC58Q96CX6 371 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 LINC00597Q9H2U6 94 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 SLC40A1Q9NP59 571 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 NT5MQ9NPB1 228 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 WDR62O43379 1518 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 SLIT3O75094 1523 aa2.01□□□□□ -2.09
VPS50-219ENST00000495039 DHX57Q6P158 1386 aaKnown RBP2□□□□□ -2.09
VPS50-219ENST00000495039 A0A0B4J2A0 478 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ZNF726A6NNF4 738 aa2□□□□□ -2.09
VPS50-219ENST00000495039 SERPINE3A8MV23 424 aa2□□□□□ -2.09
VPS50-219ENST00000495039 PSTPIP1O43586 416 aa2□□□□□ -2.09
VPS50-219ENST00000495039 SOX15O60248 233 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ENTPD5O75356 428 aa2□□□□□ -2.09
VPS50-219ENST00000495039 C1orf105O95561 183 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ZNF823P16415 610 aa2□□□□□ -2.09
VPS50-219ENST00000495039 IFNA8P32881 189 aa2□□□□□ -2.09
VPS50-219ENST00000495039 CYB561P49447 251 aa2□□□□□ -2.09
VPS50-219ENST00000495039 RORCP51449 518 aa2□□□□□ -2.09
VPS50-219ENST00000495039 NCBP2P52298 156 aaKnown RBP eCLIP2□□□□□ -2.09
VPS50-219ENST00000495039 ACTA2P62736 377 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ACTC1P68032 377 aa2□□□□□ -2.09
VPS50-219ENST00000495039 SLC7A9P82251 487 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ZNF92Q03936 586 aa2□□□□□ -2.09
VPS50-219ENST00000495039 PPIL2Q13356 520 aa2□□□□□ -2.09
VPS50-219ENST00000495039 GK3PQ14409 553 aa2□□□□□ -2.09
VPS50-219ENST00000495039 FAM83EQ2M2I3 478 aa2□□□□□ -2.09
VPS50-219ENST00000495039 C19orf35Q6ZS72 473 aa2□□□□□ -2.09
VPS50-219ENST00000495039 TMEM179Q6ZVK1 233 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ABHD13Q7L211 337 aa2□□□□□ -2.09
VPS50-219ENST00000495039 NBPF5PQ86XG9 351 aaPredicted RBP2□□□□□ -2.09
VPS50-219ENST00000495039 PSTKQ8IV42 348 aaKnown RBP2□□□□□ -2.09
VPS50-219ENST00000495039 TTC5Q8N0Z6 440 aa2□□□□□ -2.09
VPS50-219ENST00000495039 FAM86B1Q8N7N1 296 aa2□□□□□ -2.09
VPS50-219ENST00000495039 OR10G2Q8NGC3 310 aa2□□□□□ -2.09
VPS50-219ENST00000495039 OR8J1Q8NGP2 316 aa2□□□□□ -2.09
VPS50-219ENST00000495039 C12orf42Q96LP6 360 aa2□□□□□ -2.09
VPS50-219ENST00000495039 NDFIP1Q9BT67 221 aa2□□□□□ -2.09
VPS50-219ENST00000495039 ROPN1BQ9BZX4 212 aaPredicted RBP2□□□□□ -2.09
VPS50-219ENST00000495039 NOX3Q9HBY0 568 aa2□□□□□ -2.09
VPS50-219ENST00000495039 HYPKQ9NX55 129 aa2□□□□□ -2.09
VPS50-219ENST00000495039 EXTL2Q9UBQ6 330 aa2□□□□□ -2.09
VPS50-219ENST00000495039 SHPKQ9UHJ6 478 aa2□□□□□ -2.09
VPS50-219ENST00000495039 IKZF2Q9UKS7 526 aa2□□□□□ -2.09
VPS50-219ENST00000495039 KIAA1257Q9ULG3 409 aa2□□□□□ -2.09
VPS50-219ENST00000495039 TMCC3Q9ULS5 477 aa2□□□□□ -2.09
VPS50-219ENST00000495039 COL1A2P08123 1366 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 MN1Q10571 1320 aaPredicted RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 IGKV1D-17A0A075B6S4 117 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 TRAV39A0A0B4J263 110 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 INS-IGF2F8WCM5 200 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 GOSR2O14653 212 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 CTDNEP1O95476 244 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 TMEM50AO95807 157 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 RETP07949 1114 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 TLX1NBP0CAT3 122 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 CALM1P0DP23 149 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 CALM2P0DP24 149 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 CALM3P0DP25 149 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 PRPS2P11908 318 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 PGAM1P18669 254 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 SERPINB5P36952 375 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 KRTAP12-4P60329 112 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 RPL23AP62750 156 aaKnown RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 IRX3P78415 501 aaPredicted RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 CTSL3PQ5NE16 218 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 PHYHD1Q5SRE7 291 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 HES5Q5TA89 166 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 NANOGP8Q6NSW7 305 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 ZNF493Q6ZR52 646 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 SLC25A48Q6ZT89 311 aaKnown RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 ABHD12BQ7Z5M8 362 aaPredicted RBP1.99□□□□□ -2.09
VPS50-219ENST00000495039 ZNF695Q8IW36 515 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 PGAM4Q8N0Y7 254 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 SDR9C7Q8NEX9 313 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 OR10G4Q8NGN3 311 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 UBALD1Q8TB05 177 aa1.99□□□□□ -2.09
VPS50-219ENST00000495039 TMEM54Q969K7 222 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms