RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PLATP00750 562 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 BCHEP06276 602 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 HNRNPCL4P0DMR1 293 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 OMGP23515 440 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 CDKN2CP42773 168 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 CSNK1A1P48729 337 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 MMP15P51511 669 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 PUDPQ08623 228 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM155Q4W5P6 130 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 OLFML2AQ68BL7 652 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM53Q6P2H8 277 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 BRICD5Q6PL45 260 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 ZNF621Q6ZSS3 439 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 ZNF771Q7L3S4 317 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 PXKQ7Z7A4 578 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 C17orf53Q8N3J3 647 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 SPICQ8N5J4 248 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 EPS8L3Q8TE67 593 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 SLC38A5Q8WUX1 472 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 DNAJA4Q8WW22 397 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 TXNDC15Q96J42 360 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 PRDM13Q9H4Q3 707 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 PATZ1Q9HBE1 687 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 THUMPD1Q9NXG2 353 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 MRPL39Q9NYK5 338 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 SLC17A7Q9P2U7 560 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 RPS6KB2Q9UBS0 482 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 CGGBP1Q9UFW8 167 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 NPTNQ9Y639 398 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 SMIM23A6NLE4 172 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 FARS2O95363 451 aaKnown RBP12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 BGLAPP02818 100 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 CD55P08174 381 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 CCL2P13500 99 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 PCGF2P35227 344 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 SLC6A9P48067 706 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 RAG2P55895 527 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 PAX8Q06710 450 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 NRN1LQ496H8 165 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 FAM205BPQ63HN1 556 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 FAM91A1Q658Y4 838 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 PARP8Q8N3A8 854 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 KIR3DL3Q8N743 410 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM54Q969K7 222 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 UBE2FQ969M7 185 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 DIRC2Q96SL1 478 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 EPYCQ99645 322 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 RBM4BQ9BQ04 359 aaKnown RBP12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 ASPNQ9BXN1 380 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 LRMDAQ9H2I8 198 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 OR51B6Q9H340 312 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 NPHS2Q9NP85 383 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 CYSLTR2Q9NS75 346 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM38BQ9NVV0 291 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 DOCK11Q5JSL3 2073 aa12.01□□□□□ -0.49
PRPF40A-211ENST00000493468 A0A1B0GWA3 101 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 PLSCR5A0PG75 271 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 F5H0A9 414 aaPredicted RBP12□□□□□ -0.49
PRPF40A-211ENST00000493468 NGFP01138 241 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 IGHV4-38-2P0DP08 117 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 ETFAP13804 333 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 CBLP22681 906 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 LIPAP38571 399 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 DSTNP60981 165 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 HOXC5Q00444 222 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 GLO1Q04760 184 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 SLC36A2Q495M3 483 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 ALG10BQ5I7T1 473 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 RPS26P11Q5JNZ5 115 aaPredicted RBP12□□□□□ -0.49
PRPF40A-211ENST00000493468 WDR88Q6ZMY6 472 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 MIER2Q8N344 545 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 KLHL36Q8N4N3 616 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 OR52E2Q8NGJ4 325 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 OR1J1Q8NGS3 322 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 UPRTQ96BW1 309 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM19Q96HH6 336 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 TEX37Q96LM6 180 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 OR52E6Q96RD3 313 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 GLTPQ9NZD2 209 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 IL20RAQ9UHF4 553 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 ZDHHC8Q9ULC8 765 aa12□□□□□ -0.49
PRPF40A-211ENST00000493468 IQCMA0A1B0GVH7 501 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 CLPSL1A2RUU4 121 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 TMEM247A6NEH6 219 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 FAM181BA6NEQ2 426 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 ZSCAN5BA6NJL1 495 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 SRRM5B3KS81 715 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 PLPP3O14495 311 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 SPRY3O43610 288 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 GPANK1O95872 356 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 BPGMP07738 259 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 LBPP18428 481 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 HTR2AP28223 471 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 RPL15P61313 204 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 ZNF718Q3SXZ3 478 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 ZMAT1Q5H9K5 638 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 MBNL2Q5VZF2 373 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 ASPHD2Q6ICH7 369 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 OGFOD2Q6N063 350 aa11.99□□□□□ -0.49
PRPF40A-211ENST00000493468 ULK3Q6PHR2 472 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms