RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MAN2C1Q9NTJ4 1040 aa13.08□□□□□ -0.32
USP39-217ENST00000491659 ZNF224Q9NZL3 707 aa13.08□□□□□ -0.32
USP39-217ENST00000491659 EGFL7Q9UHF1 273 aa13.08□□□□□ -0.32
USP39-217ENST00000491659 FBXO9Q9UK97 447 aaPredicted RBP13.08□□□□□ -0.32
USP39-217ENST00000491659 HIF3AQ9Y2N7 669 aa13.08□□□□□ -0.32
USP39-217ENST00000491659 ARL2BPQ9Y2Y0 163 aa13.08□□□□□ -0.32
USP39-217ENST00000491659 ARFGEF3Q5TH69 2177 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ALPK2Q86TB3 2170 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 NPIPB13A6NJU9 1138 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 NPIPB4C9JG80 1138 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 DCTN3O75935 186 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 TSPAN19P0C672 248 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ACADSP16219 412 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ZNF14P17017 642 aaPredicted RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 HOXB4P17483 251 aaPredicted RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 NPR2P20594 1047 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 EFNA4P52798 201 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 RAB1AP62820 205 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 MYBPC1Q00872 1141 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 GALK2Q01415 458 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 HGFACQ04756 655 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 PRKCDQ05655 676 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 RUNX1T1Q06455 604 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 TOP3AQ13472 1001 aaPredicted RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 TAF11Q15544 211 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ANKDD1AQ495B1 522 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 GLYATQ6IB77 296 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 KRT80Q6KB66 452 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 LRFN4Q6PJG9 635 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 RRM2BQ7LG56 351 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 DPPA2Q7Z7J5 298 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 SKA3Q8IX90 412 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 CDK20Q8IZL9 346 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 RNF113BQ8IZP6 322 aaKnown RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 ZNF525Q8N782 197 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 SYT14Q8NB59 555 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 MAPK1IP1LQ8NDC0 245 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ACOT11Q8WXI4 607 aaPredicted RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 MCHR2Q969V1 340 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 MS4A3Q96HJ5 214 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 LRRC37BQ96QE4 947 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 TXNIPQ9H3M7 391 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 SAMD4AQ9UPU9 718 aaKnown RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 SPEF1Q9Y4P9 236 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 ENPP4Q9Y6X5 453 aa13.07□□□□□ -0.32
USP39-217ENST00000491659 NSD1Q96L73 2696 aaPredicted RBP13.07□□□□□ -0.32
USP39-217ENST00000491659 IGHV4-30-2A0A087WSY4 118 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 EFCAB9A8MZ26 197 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 FFAR1O14842 300 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 TRMUO75648 421 aaKnown RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 TP53P04637 393 aaPredicted RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 SLC25A16P16260 332 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 MAKP20794 623 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 THBS4P35443 961 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 SLC9A3P48764 834 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 PPOXP50336 477 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 PPP2R2BQ00005 443 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 CD47Q08722 323 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 HIST3H3Q16695 136 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 MST1LQ2TV78 715 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 SLC36A2Q495M3 483 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 NRN1LQ496H8 165 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 ARMC4Q5T2S8 1044 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 FAM205BPQ63HN1 556 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 TMEM53Q6P2H8 277 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 MBOAT2Q6ZWT7 520 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 PGAM4Q8N0Y7 254 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 RNF148Q8N7C7 305 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 RBM15BQ8NDT2 890 aaKnown RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 OR4K5Q8NGD3 323 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 FAM168AQ92567 244 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 SORCS2Q96PQ0 1159 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 SEPHS2Q99611 448 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 VRK1Q99986 396 aaPredicted RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 MRPL13Q9BYD1 178 aaKnown RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 NDEL1Q9GZM8 345 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 PLK3Q9H4B4 646 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 ANKRD19PQ9H560 264 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 NDE1Q9NXR1 346 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 TAGLN3Q9UI15 199 aa13.06□□□□□ -0.32
USP39-217ENST00000491659 FAM32AQ9Y421 112 aaKnown RBP13.06□□□□□ -0.32
USP39-217ENST00000491659 TRAV27A0A087WT01 109 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 A0A087WUU8 490 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 hCG_2039718K7EN88 272 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 PRSS23O95084 383 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 F12P00748 615 aaPredicted RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 IGHMP01871 453 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 FUT4P22083 530 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 NR4A1P22736 598 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 CTXN1P60606 82 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 RPL27P61353 136 aaKnown RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 RPS23P62266 143 aaKnown RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 LSM11P83369 360 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP39-217ENST00000491659 RAB39AQ14964 217 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 LAPTM4AQ15012 233 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 C10orf128Q5T292 105 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 GKAP1Q5VSY0 366 aaPredicted RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 SLC16A14Q7RTX9 510 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 OAFQ86UD1 273 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 OR10H5Q8NGA6 315 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms