RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 C12orf29Q8N999 325 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR2L5Q8NG80 312 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR4M1Q8NGD0 313 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR6M1Q8NGM8 313 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR9A2Q8NGT5 310 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF596Q8TC21 504 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FAM172AQ8WUF8 416 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SLC13A3Q8WWT9 602 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DEDD2Q8WXF8 326 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FAM3CQ92520 227 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NDRG1Q92597 394 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ESR2Q92731 530 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TNFRSF14Q92956 283 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 AP2M1Q96CW1 435 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SGTBQ96EQ0 304 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 BSCL2Q96G97 398 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NARS2Q96I59 477 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ELMO2Q96JJ3 720 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 RNF170Q96K19 258 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CNOT6LQ96LI5 555 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MBOAT7Q96N66 472 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPATA13Q96N96 652 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CCNL2Q96S94 520 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PCDHB18PQ96TA0 734 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 KLF6Q99612 283 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 APOL2Q9BQE5 337 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MGME1Q9BQP7 344 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PELOQ9BRX2 385 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ALKBH7Q9BT30 221 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 INPP5KQ9BT40 448 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MND1Q9BWT6 205 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TEKT3Q9BXF9 490 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PRRG3Q9BZD7 231 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MFFQ9GZY8 342 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 METTL9Q9H1A3 318 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 C1orf21Q9H246 121 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR51V1Q9H2C8 321 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPNS1Q9H2V7 528 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ST6GALNAC4Q9H4F1 302 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ELOVL6Q9H5J4 265 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 RPF2Q9H7B2 306 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MOB1AQ9H8S9 216 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NHEJ1Q9H9Q4 299 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NANOGQ9H9S0 305 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CYP3A43Q9HB55 503 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FOLH1BQ9HBA9 442 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 UBE2TQ9NPD8 197 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ASCL3Q9NQ33 180 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SOHLH2Q9NX45 425 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 BABAM2Q9NXR7 383 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CLEC5AQ9NY25 188 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 B3GNT2Q9NY97 397 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TAS2R3Q9NYW6 316 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TAS2R1Q9NYW7 299 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 RBAKQ9NYW8 714 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM216Q9P0N5 145 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 THAP10Q9P2Z0 257 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPASTQ9UBP0 616 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PISDQ9UG56 409 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 IL19Q9UHD0 177 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 BTNL2Q9UIR0 455 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 RWDD2AQ9UIY3 292 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF225Q9UK10 706 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SNX12Q9UMY4 172 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TFR2Q9UP52 801 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LIPT1Q9Y234 373 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CA5BQ9Y2D0 317 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PLLPQ9Y342 182 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MMACHCQ9Y4U1 282 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 AP4S1Q9Y587 144 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ALG5Q9Y673 324 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPEF2Q9C093 1822 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MICAL3Q7RTP6 2002 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 HIVEP1P15822 2718 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PLXNB3Q9ULL4 1909 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FLNAP21333 2647 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KIF26AQ9ULI4 1882 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CSMD1Q96PZ7 3565 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ATAD5Q96QE3 1844 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NEDD4P46934 1319 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SIPA1L3O60292 1781 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IGHV3-38A0A0C4DH36 116 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 A0A0U1RQK1 487 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF320A2RRD8 509 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 BTBD17A6NE02 478 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC182A6NF36 153 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ANKDD1BA6NHY2 528 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SAGE2PA6NJ88 616 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RFPL4AA6NLU0 287 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2AT4A6NND4 320 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 WASHC1A8K0Z3 465 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IQCF5A8MTL0 148 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 WASH3PC4AMC7 463 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM238C9JI98 176 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FAM86B1E9PN63 330 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RFPL4AL1F8VTS6 287 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 G3V2L1 256 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 G3V2T6 193 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 H3BMQ9 156 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms