RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 GIPP09681 153 aaPredicted RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 UBTFL1P0CB47 393 aaPredicted RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 PPIAL4FP0DN26 164 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ABOP16442 354 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF43P17038 809 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 KITLGP21583 273 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CRYBB2P43320 205 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CRISP3P54108 245 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 PLP1P60201 277 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ERVK-25P63136 954 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 REG3AQ06141 175 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 LRRC10Q5BKY1 277 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM255AQ5JRV8 349 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 LRRC66Q68CR7 880 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OR52W1Q6IF63 320 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 FRMPD2BQ6IN97 320 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF621Q6ZSS3 439 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CAMK2N1Q7Z7J9 78 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 THOC6Q86W42 341 aaKnown RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 PLA2G4DQ86XP0 818 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF557Q8N988 423 aaPredicted RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OR4F15Q8NGB8 312 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OR10G9Q8NGN4 311 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OR6X1Q8NH79 312 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ACER1Q8TDN7 264 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM158Q8WZ71 300 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 SMARCD2Q92925 531 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 LRRC58Q96CX6 371 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 RASD2Q96D21 266 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 TPD52L3Q96J77 140 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF578Q96N58 590 aaPredicted RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OR8B4Q96RC9 309 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 SORT1Q99523 831 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 MFFQ9GZY8 342 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 NT5MQ9NPB1 228 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 ADAP2Q9NPF8 381 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 SLC25A37Q9NYZ2 338 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 SPATA7Q9P0W8 599 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 RABL2AQ9UBK7 228 aaPredicted RBP1.45□□□□□ -2.18
CPSF3-205ENST00000489629 OPN4Q9UHM6 478 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 TRAPPC4Q9Y296 219 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 N6AMT1Q9Y5N5 214 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 DENND4AQ7Z401 1863 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 PDS5BQ9NTI5 1447 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IGKV1D-13A0A0B4J2D9 117 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 H0Y8G0 127 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SGK1O00141 431 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 CCL21O00585 134 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 RNF13O43567 381 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 C2P06681 752 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 TPM2P07951 284 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IGHV3-43DP0DP04 118 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IGKV1-13P0DP09 117 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 TCN1P20061 433 aaPredicted RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 CASP14P31944 242 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 HSD17B2P37059 387 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 GPR6P46095 362 aaPredicted RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SUB1P53999 127 aaKnown RBP eCLIP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 FGF8P55075 233 aaPredicted RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 FBXW4P57775 412 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 BST2Q10589 180 aaKnown RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IDI1Q13907 227 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 FZD2Q14332 565 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 MRPL23Q16540 153 aaKnown RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SGCAQ16586 387 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 GUCA2BQ16661 112 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 FAM83EQ2M2I3 478 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 KRTAP13-2Q52LG2 175 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 C5orf47Q569G3 176 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 LY6G6FQ5SQ64 297 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 C1orf185Q5T7R7 199 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 LCN12Q6JVE5 192 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SASS6Q6UVJ0 657 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF836Q6ZNA1 936 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 LRRC74BQ6ZQY2 392 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 TTC5Q8N0Z6 440 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 ZADH2Q8N4Q0 377 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 NECAB1Q8N987 351 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 OR4F6Q8NGB9 312 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 OR1N2Q8NGR9 330 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SLC2A14Q8TDB8 520 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 ELMO1Q92556 727 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IFT74Q96LB3 600 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SPIN2AQ99865 258 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SH3GL1Q99961 368 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SPIN2BQ9BPZ2 258 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 VPS37BQ9H9H4 285 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 UGT1A7Q9HAW7 530 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 UGT1A10Q9HAW8 530 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 UGT1A8Q9HAW9 530 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 MRPL47Q9HD33 250 aaKnown RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 EXD2Q9NVH0 621 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 KLHL28Q9NXS3 571 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 NUFIP1Q9UHK0 495 aaKnown RBP1.44□□□□□ -2.18
CPSF3-205ENST00000489629 IKZF2Q9UKS7 526 aa1.44□□□□□ -2.18
CPSF3-205ENST00000489629 SERTM2A0A1B0GWG4 89 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 TEX46H3BTG2 121 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PEX7O00628 323 aa1.43□□□□□ -2.18
CPSF3-205ENST00000489629 EIF3HO15372 352 aaKnown RBP eCLIP1.43□□□□□ -2.18
CPSF3-205ENST00000489629 PSTPIP1O43586 416 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms