RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 BOD1Q96IK1 185 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 GPA33Q99795 319 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 SIGLEC7Q9Y286 467 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 ADAM18Q9Y3Q7 739 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 LYVE1Q9Y5Y7 322 aa12.88□□□□□ -0.35
USP4-212ENST00000486549 AKAP9Q99996 3911 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 IGHV1-18A0A0C4DH31 117 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 DHRS12A0PJE2 317 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 NPIPB13A6NJU9 1138 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 AQP12BA6NM10 295 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 SHISA9B4DS77 424 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 NPIPB4C9JG80 1138 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 H7C1C5 153 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 ATP5HO75947 161 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 KRT36O76013 467 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 NDUFB2O95178 105 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 SLC2A10O95528 541 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 HLA-HP01893 362 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 RAP2AP10114 183 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 CD99P14209 185 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 HOXB1P14653 301 aaPredicted RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 IFNGR2P38484 337 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 ZNF84P51523 738 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 IDH3GP51553 393 aaPredicted RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 LCN6P62502 163 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 NPRL3Q12980 569 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 ZNF672Q499Z4 452 aaPredicted RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 ZER1Q7Z7L7 766 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 MDP1Q86V88 176 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 AQP12AQ8IXF9 295 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 ADGRG5Q8IZF4 528 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 CLDN22Q8N7P3 220 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 FANK1Q8TC84 345 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 CANT1Q8WVQ1 401 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 NSMAFQ92636 917 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 POP5Q969H6 163 aaKnown RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 FBXW5Q969U6 566 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 RADILQ96JH8 1075 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 SLC38A2Q96QD8 506 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 MRPL13Q9BYD1 178 aaKnown RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 BEX4Q9NWD9 120 aaPredicted RBP12.87□□□□□ -0.35
USP4-212ENST00000486549 SLC7A8Q9UHI5 535 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 MGAT4BQ9UQ53 548 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 POMPQ9Y244 141 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 U3KQV3 271 aa12.87□□□□□ -0.35
USP4-212ENST00000486549 CENPBD1B2RD01 187 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 ATP6V1G2-DDX39BF2Z307 99 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 PTP4A3O75365 173 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 CD14P08571 375 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 CELA3BP08861 270 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 PIGFQ07326 219 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 HIST3H3Q16695 136 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 DEFB113Q30KQ7 82 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 C1QTNF12Q5T7M4 302 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 FAM205BPQ63HN1 556 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 OR2T5Q6IEZ7 315 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 THSD4Q6ZMP0 1018 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 TGIF2LYQ8IUE0 185 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 DEPDC4Q8N2C3 294 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 ZNF611Q8N823 705 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 OR9Q2Q8NGE9 314 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 OR2T29Q8NH02 315 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 ZNF519Q8TB69 540 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 NANOS1Q8WY41 292 aaKnown RBP12.86□□□□□ -0.35
USP4-212ENST00000486549 PIGTQ969N2 578 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 Q96M85 177 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 ZNF570Q96NI8 536 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 KCNK17Q96T54 332 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 KCNS3Q9BQ31 491 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 ALG12Q9BV10 488 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 CHID1Q9BWS9 393 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 REEP1Q9H902 201 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 SEC61A2Q9H9S3 476 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 NOX3Q9HBY0 568 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 TMEM38BQ9NVV0 291 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 VNN3Q9NY84 501 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 CISD1Q9NZ45 108 aaKnown RBP12.86□□□□□ -0.35
USP4-212ENST00000486549 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 SAMHD1Q9Y3Z3 626 aaKnown RBP12.86□□□□□ -0.35
USP4-212ENST00000486549 ATP23Q9Y6H3 246 aa12.86□□□□□ -0.35
USP4-212ENST00000486549 PLCE1Q9P212 2302 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CELSR1Q9NYQ6 3014 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 IGKV1D-43A0A0B4J1Z2 117 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 TEX13CA0A0J9YWL9 993 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 A6NIZ1 184 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 XKRYO14609 159 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 ARHGEF9O43307 516 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CCNB2O95067 398 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CECR9P0C854 216 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 NR2C1P13056 603 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 FOSL1P15407 271 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CBR1P16152 277 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 FPR3P25089 353 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 FXYD6P3P58550 94 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 RAP1BP61224 184 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 RAP1AP62834 184 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 GSG1Q2KHT4 349 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 MESTQ5EB52 335 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 PGBD2Q6P3X8 592 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 SMARCD3Q6STE5 483 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms