RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 C20orf196Q8IYI0 205 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SPARTQ8N0X7 666 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 TEX19Q8NA77 164 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ZNF540Q8NDQ6 660 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 TSPAN14Q8NG11 270 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 OR52I1Q8NGK6 324 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 OR5M9Q8NGP3 310 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 IPCEF1Q8WWN9 437 aaPredicted RBP7.31□□□□□ -1.24
USP4-210ENST00000483212 RFKQ969G6 155 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RNFT2Q96EX2 444 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 WBP1Q96G27 269 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 CNTNAP3BQ96NU0 1288 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ZNF649Q9BS31 505 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 COPS4Q9BT78 406 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 JAM3Q9BX67 310 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 CNTNAP3Q9BZ76 1288 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RACGAP1Q9H0H5 632 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 OR51V1Q9H2C8 321 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 MARCH7Q9H992 704 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ADGRL4Q9HBW9 690 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 GP6Q9HCN6 339 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ASF1BQ9NVP2 202 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SCN3BQ9NY72 215 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 KLHL9Q9P2J3 617 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 BLOC1S6Q9UL45 172 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.31□□□□□ -1.24
USP4-210ENST00000483212 B9D1Q9UPM9 204 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 MOKQ9UQ07 419 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ZNF835Q9Y2P0 537 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 FAM215AQ9Y5M1 114 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 MAP1BP46821 2468 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 CD8B2A6NJW9 211 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SLC22A20A6NK97 555 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SNTNA6NMZ2 147 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 FAM171A2A8MVW0 826 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 PTGES3LE9PB15 166 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 M0R3G1 203 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 GPR171O14626 319 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 RGS10O43665 173 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SLC16A7O60669 478 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SS18L1O75177 396 aaPredicted RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 APOL3O95236 402 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 MT-ND2P03891 347 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SBK2P0C263 348 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 GAAP10253 952 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SFTPCP11686 197 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 PSKH1P11801 424 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 FCGR2AP12318 317 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 PCMT1P22061 227 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 C21orf33P30042 268 aaPredicted RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 TUBA4AP68366 448 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 LGALS3BPQ08380 585 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 ST3GAL4Q11206 333 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 LY6DQ14210 128 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 RNPS1Q15287 305 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 KLHL12Q53G59 568 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 C10orf128Q5T292 105 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 RNLSQ5VYX0 342 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 NSUN5P2Q63ZY6 315 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 GTF2IRD2BQ6EKJ0 949 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 XAF1Q6GPH4 301 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 LRFN4Q6PJG9 635 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 FOXL2NBQ6ZUU3 175 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 LINGO2Q7L985 606 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SHFQ7M4L6 423 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 PRSS48Q7RTY5 328 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 GTF2IRD2Q86UP8 949 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 TUSC5Q8IXB3 177 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 TIGD4Q8IY51 512 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 C9orf106Q8NAJ2 232 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 SYT14Q8NB59 555 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 OR4F15Q8NGB8 312 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 OR51L1Q8NGJ5 315 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 OR2T4Q8NH00 348 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 FAM57AQ8TBR7 257 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 WNT2BQ93097 391 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 MCHR2Q969V1 340 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 OTULINQ96BN8 352 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 ZMYND19Q96E35 227 aaPredicted RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 TRIB1Q96RU8 372 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 CDCA4Q9BXL8 241 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 MRPS26Q9BYN8 205 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 SRA1Q9HD15 236 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 CCNB1IP1Q9NPC3 277 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 MRPL22Q9NWU5 206 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 TAS2R16Q9NYV7 291 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 H2AFY2Q9P0M6 372 aaPredicted RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 CLEC4AQ9UMR7 237 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 DIMT1Q9UNQ2 313 aaKnown RBP7.3□□□□□ -1.24
USP4-210ENST00000483212 UGT2A1Q9Y4X1 527 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 PCDHGB1Q9Y5G3 927 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 NBEAQ8NFP9 2946 aa7.3□□□□□ -1.24
USP4-210ENST00000483212 A0A087WXM4 84 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 IRGMA1A4Y4 181 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 MBD3L4A6NDZ8 208 aaPredicted RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 MBD3L3A6NE82 208 aaPredicted RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 MBD3L5A6NJ08 208 aaPredicted RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 ZNF726A6NNF4 738 aa7.29□□□□□ -1.24
USP4-210ENST00000483212 AKAP8O43823 692 aaKnown RBP7.29□□□□□ -1.24
USP4-210ENST00000483212 WDR1O75083 606 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms