RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZNF587Q96SQ5 575 aaPredicted RBP12.39□□□□□ -0.43
USP42-206ENST00000479544 PRRT1Q99946 306 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 ZFYVE21Q9BQ24 234 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 TINAGL1Q9GZM7 467 aaPredicted RBP12.39□□□□□ -0.43
USP42-206ENST00000479544 HIF3AQ9Y2N7 669 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 CTSAP10619 480 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 HTR2CP28335 458 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 EMP2P54851 167 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 SLC7A9P82251 487 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 OR4K17Q8NGC6 315 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 CDC6Q99741 560 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 GHITMQ9H3K2 345 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 PIGMQ9H3S5 423 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 IFT22Q9H7X7 185 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 SCPEP1Q9HB40 452 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 EMC9Q9Y3B6 208 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 KCNAB3O43448 404 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 GPR75O95800 540 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 OR4E1P0C645 316 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 IRF4Q15306 451 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 STAC2Q6ZMT1 411 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 RNF113BQ8IZP6 322 aaKnown RBP12.39□□□□□ -0.43
USP42-206ENST00000479544 RNF141Q8WVD5 230 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 MYADMQ96S97 322 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 ENKD1Q9H0I2 346 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 C12orf10Q9HB07 376 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 VDAC3Q9Y277 283 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 OR51B4Q9Y5P0 310 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 CSAG2Q9Y5P2 127 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 ZNF705GA8MUZ8 300 aaPredicted RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 RNGTTO60942 597 aaKnown RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 STK17BO94768 372 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 ZFPL1O95159 310 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 SLC2A1P11166 492 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 IGFBP4P22692 258 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 BAMBIQ13145 260 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 MEX3BQ6ZN04 569 aaKnown RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 CAMKMTQ7Z624 323 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 OR6N1Q8NGY5 312 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 FAM174AQ8TBP5 190 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 C10orf90Q96M02 699 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 WDR77Q9BQA1 342 aaPredicted RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 NUDT22Q9BRQ3 303 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 ZNF304Q9HCX3 659 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 TESQ9UGI8 421 aaKnown RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 HHLA2Q9UM44 414 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 KCNIP3Q9Y2W7 256 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 FAM74A7A6NL05 159 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 ZNF726A6NNF4 738 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 SUSD5O60279 629 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 CTSLP07711 333 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 NID1P14543 1247 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 FAM74A3Q4VXF1 159 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 NAA40Q86UY6 237 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 MED12Q93074 2177 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 MYOFQ9NZM1 2061 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 MED19A0JLT2 244 aaPredicted RBP12.38□□□□□ -0.43
USP42-206ENST00000479544 ABLIM3O94929 683 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 OR13C7P0DN81 318 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 HOXB2P14652 356 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 SPI1P17947 270 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 NDUFA6P56556 154 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 S100A12P80511 92 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 ALKBH2Q6NS38 261 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 GABRG1Q8N1C3 465 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 OR1S2Q8NGQ3 325 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 OR1J2Q8NGS2 313 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 DIO2Q92813 273 aa12.38□□□□□ -0.43
USP42-206ENST00000479544 H0YGG7 62 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 SULT1A3P0DMM9 295 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 SULT1A4P0DMN0 295 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ARF3P61204 181 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 TRA2BP62995 288 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 CYCSP99999 105 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 AKR1C8PQ5T2L2 129 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 DNM1P34Q6PK57 102 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZNF704Q6ZNC4 412 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 OR52H1Q8NGJ2 320 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ELP5Q8TE02 316 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 NRSN2Q9GZP1 204 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 FKRPQ9H9S5 495 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 MBNL1Q9NR56 388 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 SIRT3Q9NTG7 399 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 ZNF337Q9Y3M9 751 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 A0A087WV62 115 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZNF98A6NK75 572 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZNF16P17020 682 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 P2RY2P41231 377 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 PRSS53Q2L4Q9 553 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 GPR157Q5UAW9 335 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZNF776Q68DI1 518 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 TMEM225Q6GV28 225 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 NXPE3Q969Y0 559 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 FBXO17Q96EF6 278 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ALG14Q96F25 216 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 GAREM1Q9H706 876 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 BCL2L10Q9HD36 194 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 STEAP1Q9UHE8 339 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 NEUROG3Q9Y4Z2 214 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms