RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SERPINE2P07093 398 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CHTF8P0CG12 524 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 IGKV1-13P0DP09 117 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 ICAM2P13598 275 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 PRKACAP17612 351 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 MSR1P21757 451 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CPN2P22792 545 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 BTCP35070 178 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 KIAA0087Q14695 138 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 NRF1Q16656 503 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CCDC14Q49A88 953 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 TTC23LQ6PF05 361 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CMTM1Q8IZ96 169 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 SLC7A13Q8TCU3 470 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 OPALINQ96PE5 141 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 ROGDIQ9GZN7 287 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CCNB1IP1Q9NPC3 277 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 HRASLS2Q9NWW9 162 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 LGALS13Q9UHV8 139 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 SLC25A15Q9Y619 301 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 TNIKQ9UKE5 1360 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 PLEKHG1Q9ULL1 1385 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TRAV39A0A0B4J263 110 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 GLYATL1P3A0A0U1RQE8 302 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 FAM231BA6NCW3 169 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 GABRR3A8MPY1 467 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 A8MUA0 341 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TEX46H3BTG2 121 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 SERPINA5P05154 406 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 FOLR1P15328 257 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 SRMP19623 302 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TUBG1P23258 451 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CD1BP29016 333 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 SF3A2Q15428 464 aaKnown RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 NSDHLQ15738 373 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CNIH2Q6PI25 160 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 HDDC2Q7Z4H3 204 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 APRG1Q8IVJ8 170 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 LINC00612Q8N6U2 182 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TTC29Q8NA56 475 aaPredicted RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 OR10G9Q8NGN4 311 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 OR1N2Q8NGR9 330 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CAPSLQ8WWF8 208 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF707Q96C28 371 aaPredicted RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 RPUSD4Q96CM3 377 aaKnown RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 PIK3IP1Q96FE7 263 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 MED8Q96G25 268 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TMEM101Q96IK0 257 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 JSRP1Q96MG2 331 aaPredicted RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 HES7Q9BYE0 225 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 RGCCQ9H4X1 137 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 C8orf33Q9H7E9 229 aaPredicted RBP3.66□□□□□ -1.82
UPF3B-203ENST00000478840 UGT1A7Q9HAW7 530 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 UGT1A8Q9HAW9 530 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CYP3A43Q9HB55 503 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 TUBG2Q9NRH3 451 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CCL28Q9NRJ3 127 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 MROH7-TTC4A0A0A0MT08 1334 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 CHD4Q14839 1912 aa3.66□□□□□ -1.82
UPF3B-203ENST00000478840 KIF27Q86VH2 1401 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 A0A0B4J2A0 478 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 A0A0G2JN53 185 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 FAM25EA8MYX2 175 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 CLDN11O75508 207 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 CRYGCP07315 174 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 TDGF1P13385 188 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 AK4P27144 223 aaPredicted RBP3.65□□□□□ -1.83
UPF3B-203ENST00000478840 TNFSF9P41273 254 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 RORCP51449 518 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 CCR8P51685 355 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 TDGF1P3P51864 188 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 RAD51Q06609 339 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 FZD2Q14332 565 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 RSBN1Q5VWQ0 802 aaPredicted RBP3.65□□□□□ -1.83
UPF3B-203ENST00000478840 OR52W1Q6IF63 320 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 SPESP1Q6UW49 350 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 IL34Q6ZMJ4 242 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 CMC1Q7Z7K0 106 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 P2RY8Q86VZ1 359 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 RALGPS2Q86X27 583 aaPredicted RBP3.65□□□□□ -1.83
UPF3B-203ENST00000478840 LYG1Q8N1E2 194 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 JAGN1Q8N5M9 183 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 PRELID2Q8N945 189 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 OR10R2Q8NGX6 335 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 LYPD6BQ8NI32 183 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 OSBPL10Q9BXB5 764 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 IL22Q9GZX6 179 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 RPS10P5Q9NQ39 176 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 CCDC59Q9P031 241 aaKnown RBP3.65□□□□□ -1.83
UPF3B-203ENST00000478840 SHPKQ9UHJ6 478 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 GOLT1BQ9Y3E0 138 aa3.65□□□□□ -1.83
UPF3B-203ENST00000478840 A0A1B0GVI7 797 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SCAMP2O15127 329 aaKnown RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 AIREO43918 545 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 FAM189A1O60320 539 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SUPT7LO94864 414 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SNAI1O95863 264 aaPredicted RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 C6orf47O95873 294 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 GKN3PP0CG01 181 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms