RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PAQR4Q8N4S7 273 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RFLNBQ8N5W9 214 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RNF217Q8TC41 542 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LIPHQ8WWY8 451 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 YIPF5Q969M3 257 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MAGEB18Q96M61 343 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SNX18Q96RF0 628 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TPK1Q9H3S4 243 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DYNLRB1Q9NP97 96 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MED4Q9NPJ6 270 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NANSQ9NR45 359 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CPSF4LA6NMK7 179 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CENPBD1B2RD01 187 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FBP2O00757 339 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 WNT9BO14905 357 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DHHO43323 396 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RP2O75695 350 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NCR1O76036 304 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SNAP29O95721 258 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RAB36O95755 333 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ACHEP22303 614 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LMO4P61968 165 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RPS23P62266 143 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RUNX1T1Q06455 604 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CYP51A1Q16850 503 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TTC33Q6PID6 262 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C10orf53Q8N6V4 93 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OR10A6Q8NH74 314 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RDH5Q92781 318 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF566Q969W8 418 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NMD3Q96D46 503 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SH3GL3Q99963 347 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SYT3Q9BQG1 590 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC7A8Q9UHI5 535 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC7A7Q9UM01 511 aa10.49□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ARHGAP32A7KAX9 2087 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 B4DSR2 109 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RNF13O43567 381 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MGRN1O60291 552 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SERPINI2O75830 405 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MMP7P09237 267 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 QDPRP09417 244 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TCN1P20061 433 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 UGT2B15P54855 530 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MELKQ14680 651 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MAD2L1BPQ15013 274 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 VMACQ2NL98 169 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C10orf128Q5T292 105 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 METTL21CQ5VZV1 264 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 REP15Q6BDI9 236 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NANOGP8Q6NSW7 305 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DPPA2Q7Z7J5 298 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CLDND2Q8NHS1 167 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MCHR2Q969V1 340 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NANOGQ9H9S0 305 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF275Q9NSD4 429 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF446Q9NWS9 450 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NKIRAS2Q9NYR9 191 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TRIM33Q9UPN9 1127 aa10.48□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DYSFO75923 2080 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NPIPB13A6NJU9 1138 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FAM157AC9JC47 383 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NPIPB4C9JG80 1138 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FXYD1O00168 92 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ANGPT2O15123 496 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 EDF1O60869 148 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ENTPD5O75356 428 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OR6A2O95222 327 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 BCL10O95999 233 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CLPTM1O96005 669 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MT-ND1P03886 318 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NAT2P11245 290 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 GPR6P46095 362 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 GALK2Q01415 458 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RPL18Q07020 188 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ARMC4Q5T2S8 1044 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 INTS11Q5TA45 600 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LIPNQ5VXI9 398 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NKAIN4Q8IVV8 208 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC30A7Q8NEW0 376 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OR4K5Q8NGD3 323 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 VANGL1Q8TAA9 524 aaPredicted RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RASSF5Q8WWW0 418 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ASB10Q8WXI3 467 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF347Q96SE7 839 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SIKE1Q9BRV8 207 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 POLR2J2Q9GZM3 115 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 POLR2J3Q9H1A7 115 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF346Q9UL40 294 aaKnown RBP10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FZR1Q9UM11 496 aa10.47□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC22A23A1A5C7 686 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C17orf100A8MU93 164 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 BLOC1S5-TXNDC5H3BN57 136 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 KPNA4O00629 521 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TCF21O43680 179 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TRMUO75648 421 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 IGHG1P01857 330 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TFP02787 698 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HIST1H2ABP04908 130 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 GAAP10253 952 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms