RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMEM239Q8WW34 195 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 ASB10Q8WXI3 467 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF566Q969W8 418 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 NMD3Q96D46 503 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF347Q96SE7 839 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 SH3GL3Q99963 347 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 MRPL37Q9BZE1 423 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 MAN2C1Q9NTJ4 1040 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 MRGBPQ9NV56 204 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 BLOC1S5-TXNDC5H3BN57 136 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 NME4O00746 187 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 FFAR1O14842 300 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 DHHO43323 396 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 UMPSP11172 480 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 PDLIM4P50479 330 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 ZNF133P52736 654 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 GYS2P54840 703 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 FHL1Q13642 323 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 ARMC4Q5T2S8 1044 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 LRP11Q86VZ4 500 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 PAQR4Q8N4S7 273 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 PCYOX1LQ8NBM8 494 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 SOX7Q9BT81 388 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 POLR2J2Q9GZM3 115 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 POLR2J3Q9H1A7 115 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 GID8Q9NWU2 228 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 MYEF2Q9P2K5 600 aaKnown RBP12.15□□□□□ -0.46
UPF3A-204ENST00000475218 FKBP7Q9Y680 259 aa12.15□□□□□ -0.46
UPF3A-204ENST00000475218 IGKV1D-43A0A0B4J1Z2 117 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 ELOVL7A1L3X0 281 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 NDUFS8O00217 210 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 SLC22A2O15244 555 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 QDPRP09417 244 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF16P17020 682 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-204ENST00000475218 MDH1P40925 334 aaKnown RBP12.14□□□□□ -0.47
UPF3A-204ENST00000475218 SELENOWP63302 87 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 MYBPC1Q00872 1141 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 LAPTM4AQ15012 233 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 TSEN54Q7Z6J9 526 aaKnown RBP12.14□□□□□ -0.47
UPF3A-204ENST00000475218 VTCN1Q7Z7D3 282 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 MEX3DQ86XN8 651 aaKnown RBP12.14□□□□□ -0.47
UPF3A-204ENST00000475218 MCHR2Q969V1 340 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 MRPL24Q96A35 216 aaKnown RBP12.14□□□□□ -0.47
UPF3A-204ENST00000475218 SGTBQ96EQ0 304 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 BPESC1Q9GZL8 116 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 UGT2A1Q9Y4X1 527 aa12.14□□□□□ -0.47
UPF3A-204ENST00000475218 LOC390937A0A1W2PQ73 354 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 SH3PXD2BA1X283 911 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 J3KTA2 159 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 TRMUO75648 421 aaKnown RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 PRSS23O95084 383 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 UBL3O95164 117 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 STAMBPO95630 424 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 BCL10O95999 233 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 HIST1H2ABP04908 130 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 SERPINA5P05154 406 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 THRBP10828 461 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 COX4I1P13073 169 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 GGTLC2Q14390 218 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 HIST3H2AQ7L7L0 130 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 ARIH2OSQ8N7S6 290 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 SYT14Q8NB59 555 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 NOXO1Q8NFA2 376 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 OR4K5Q8NGD3 323 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 HDAC2Q92769 488 aaKnown RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 HIST1H2ACQ93077 130 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 TPD52L3Q96J77 140 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 DENND2DQ9H6A0 471 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.13□□□□□ -0.474e-9■■■■■ 37
UPF3A-204ENST00000475218 LYNX1G3V0Z9 82 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 IGHG1P01857 330 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 ADRA2AP08913 450 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 MMP7P09237 267 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 OR8G3PP0DMU2 310 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 LYNX1P0DP58 116 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 ACADSP16219 412 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 MAKP20794 623 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 GIFP27352 417 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 LIPEQ05469 1076 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 C10orf67Q8IYJ2 551 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 LRRC75AQ8NAA5 344 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 RP9Q8TA86 221 aaKnown RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 NABP1Q96AH0 204 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 MSI2Q96DH6 328 aaKnown RBP12.13□□□□□ -0.47
UPF3A-204ENST00000475218 PRRC1Q96M27 445 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 PIMREGQ9BSJ6 248 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 TPK1Q9H3S4 243 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 RHCGQ9UBD6 479 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 FZR1Q9UM11 496 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 HIF3AQ9Y2N7 669 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 CMAHPQ9Y471 501 aa12.13□□□□□ -0.47
UPF3A-204ENST00000475218 SLC2A10O95528 541 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 RAB36O95755 333 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 IFNA14P01570 189 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 CCL2P13500 99 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 DAOP14920 347 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 GLRXP35754 106 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 YAP1P46937 504 aaKnown RBP12.12□□□□□ -0.47
UPF3A-204ENST00000475218 FMODQ06828 376 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 MAD2L1BPQ15013 274 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms